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16-1310-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21208060 [Map]; Strand: c
      • AT5G52220.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (Inter...
        Distance: -382; Region: promoter
      • AT5G52220.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -344; Region: promoter
      • AT5G52230.1 - [+] show detail - methyl-CPG-binding domain protein 13
        Distance: 0; Region: exon6 (3UTR)
      • AT5G52230.2 - [+] show detail - methyl-CPG-binding domain protein 13
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 16-1310-1 - 5-prime edge 
    ATCTAAGGTT TACACAATCT TTCTCTAAGG ACTAACAAGA ACAAAATAAA 
    GCCTACTGTA CTTTTAGGTG TTTTCGTATA TTAGGGTTTT TGATAATGCC 
    ATTGGTATCG TGTAAGATCC ATGTGCAATG CCTTAGCNTT TATTTTCTTT 
    CGGGCCATGT TCTGTTGTAA ATACATATGT ATTAGTGTTG TGTATCGACA 
    GAACCTTGAA AAACTCATAA AAACTCTTCC TTTAACCACC CCCAATGATC 
    TTGTTTCTTC TTCTTAAAGA TGGATCTTTT CTAGTTTTCT TTCTCAAATT 
    TTGAATGCAT CTTTGAGAAG ATGATGGTGA CGTCATCTTA AACGAAAAAA 
    GCCCGCGAAA GATCTCTAAT TTTCCGCCAA AATTTATATA CATACATATA 
    TATAAAGTGA ATATATAGAA TT

AT5G52220.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52220.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607).
Link
InterPro Scan - TAIR

AT5G52230.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain protein 13
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain protein 13 (MBD13); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 6509 Blast hits to 4943 proteins in 596 species: Archae - 10; Bacteria - 822; Metazoa - 2790; Fungi - 554; Plants - 296; Viruses - 34; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52230.2

Model type
Protein coding
Short Description
methyl-CPG-binding domain protein 13
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain protein 13 (MBD13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739).
Link
InterPro Scan - TAIR