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16-2383-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11662380 [Map]; Strand: c
      • AT1G32337.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 258; Region: intergenic
      • AT1G32340.1 - [+] show detail - NDR1/HIN1-like 8
        Distance: 690; Region: intergenic
    Flanking Genome Sequence: 16-2383-1 - 5-prime edge 
    CAAAAAAGGA ACACTTCCTG TATTTTGTTG TTTCCTTTTC GGGTAAAGCT 
    ATTTAGCTCT AATTTAGGAA ATTACAAAGT AAATTACTAA TTAGATATGC 
    AGTATTACTT TTCTTCTTCT TCTTTTTTTT TAATCACAAA TATAACTTTT 
    TTTTACTTCT TCTTCCTANA TCTTTTTTTT TCTCTTTTCT NATTCTTNAT 
    CTACNCTNGG ATCTGCNGCT TAAGCAAAGC T

AT1G32337.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32340.1

Model type
Protein coding
Short Description
NDR1/HIN1-like 8
Curator Summary
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.
Computational Description
NDR1/HIN1-like 8 (NHL8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3653 Blast hits to 3199 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1736; Fungi - 604; Plants - 670; Viruses - 7; Other Eukaryotes - 636 (source: NCBI BLink).
Link
InterPro Scan - TAIR