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16-2541-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19761926 [Map]; Strand: w
      • AT5G48720.1 - [+] show detail - x-ray induced transcript 1
        Distance: 205; Region: intergenic
      • AT5G48730.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -1226; Region: intergenic
    Flanking Genome Sequence: 16-2541-1 - 3-prime edge 
    GTAATGGATA ACAAAACTTG CTTATACTTT GTATAGCAGT CCAACCAGAG 
    AGAGAGACAA GTTTCAGGTA ACATTGAGAA CCAGGGACTT TATACAAACA 
    AAAATATCTA CCACATGGCT AACAGATCTT TAAAGCT

AT5G48720.1

Model type
Protein coding
Short Description
x-ray induced transcript 1
Curator Summary
Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.
Computational Description
X-RAY INDUCED TRANSCRIPT 1 (XRI1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 117 Blast hits to 117 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G48730.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR