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16-2869-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9634959 [Map]; Strand: w
      • AT1G27680.1 - [+] show detail - ADPGLC-PPase large subunit
        Distance: 362; Region: intergenic
      • AT1G27690.1 - [+] show detail - Protein of unknown function (DUF620)
        Distance: -1635; Region: intergenic
    Flanking Genome Sequence: 16-2869-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCCATAT 
    ACAGTTGCAG ACATAAAAAG TTAGGAGACT TTTTCAGGAC TGTTGGCCTT
    GGATTAATTT GACACTAATT GAGTTGGTGA GGTAGCTTCT AGTGGTCCTT
    ACCTTCTCTA AAGATCAGAC CATTTAGTCT TCAGAACCTA TTCTCTCATT
    CTCACTGCAA TAAGAGACAA GAGTTTTATG ACTCTTTTTA TAATCCCATA
    AAACTCGAAT GAAATATCTA TAATTTGTAA AGTGTATATA TGGATGGGAG
    TCTCAAGTCT TGTGTTGTGA CTTGTGATCG AGAGAGTGAA GAATTTTACA
    CATGCTTTTT TCTCGTCTGT TTGTGATTGG TTTCTCTCTG TGTTTTACGT
    AATCATTAAG ATTTACCAAG ATTAACGATC ACGTTTAAAG TTGCTAAAAC
    TGTCATTCGT TTGTGCCTCT TGTTTTATTA AATTATTAAT CGAACGTAAC
    TAGTCTCGTT ACAAAATCAC AAGACGCCAC ATACACTGCT CCTAAAGAGA
    GGTTTAAAAG CT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9635035 [Map]; Strand: w
      • AT1G27680.1 - [+] show detail - ADPGLC-PPase large subunit
        Distance: 438; Region: intergenic
      • AT1G27690.1 - [+] show detail - Protein of unknown function (DUF620)
        Distance: -1559; Region: intergenic
    Flanking Genome Sequence: 16-2869-1 - 5-prime edge
    ATGGGACATC CCTAGTTTTC TTAATTTTGA ATCTTGATTC TTGAGTTAAA 
    ACAAAAACCC AAATATACAA GTATGCATGA AACGTAAACT TTCAGAGAAG
    GTTTCTCACA TTAAGTATCC TTTGAGTTAA GTATATAGTC CATAAGACTG
    TTTTTGGTTT TAATTTTAGT ATTTGTGTGT TTGGGCCTCC CAAAGATTGT
    TGGCAGAAAA GTTGTCATTA TCACTGGACC AAACTCGCAT GCTCAATATT
    TATCATCACC AGTTATAATT ACATACACCG ACTGCTTTTT TAATTTTATT
    CATTTTATAT TCTCTCGGCC TCATGGCACC GTTACTTCCC GCCTCACGTT
    GACGATATAT GAGAGAATAT TTTATCATCA TATCATAGTG AAGATAATAG
    CACAAAATCA CAACACAAGT TTTTGGTAAG TAATGATCGT CCGCTGTAAT
    GATCGTCCGC TCAATAGGGT TATTGGTAAG TAAGAATGAA CCTGAGCTAT
    AATAACTTGA TATCAAAATC GTGTGTGATT GTAGAAAAAA AAAATCTNAT
    AAATNATNNT TNGTTNACTT TTTGTCAAAC ACTTATNTNT AAGGTNTTTA
    AAACTANATA TAAGGTNTTT TANACTGGTA AAACAAAACT AANAAAACAN
    TTTTTTGAAC TAAATNTGGA CNACAAAAAA AAAA

AT1G27680.1

Model type
Protein coding
Short Description
ADPGLC-PPase large subunit
Curator Summary
ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.
Computational Description
ADPGLC-PPase large subunit (APL2); CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Glucose-1-phosphate adenylyltransferase family protein (TAIR:AT4G39210.1); Has 11860 Blast hits to 11712 proteins in 2161 species: Archae - 516; Bacteria - 8154; Metazoa - 62; Fungi - 36; Plants - 1704; Viruses - 0; Other Eukaryotes - 1388 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27690.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF620)
Computational Description
Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glycerol biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT3G19540.1); Has 217 Blast hits to 215 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR