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51-2565-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30181020 [Map]; Strand: c
      • AT1G80270.3 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
        Distance: 0; Region: exon1 (5UTR)
      • AT1G80270.2 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
        Distance: 0; Region: exon1 (5UTR)
      • AT1G80270.1 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 51-2565-3 - 3-prime edge 
    CGNATAAACC CTTTGTGTTT GTANTCTCTC TACTCTCTAG ATCCCATCCC 
    ANTTCTTGAT CAGCCTCGGC GCATTGTGTG CTATACACGT ANTCCTCTAG 
    CTTCTTTCCT CGGTATTCCT TGTCTAATTC GAACTT

AT1G80270.1

Model type
Protein coding
Short Description
PENTATRICOPEPTIDE REPEAT 596
Computational Description
PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80270.2

Model type
Protein coding
Short Description
PENTATRICOPEPTIDE REPEAT 596
Computational Description
PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80270.3

Model type
Protein coding
Short Description
PENTATRICOPEPTIDE REPEAT 596
Computational Description
PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
Link
InterPro Scan - TAIR