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52-0024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 844310 [Map]; Strand: c
      • AT4G01940.1 - [+] show detail - NFU domain protein 1
        Distance: -851; Region: promoter
    Flanking Genome Sequence: 52-0024-1 - 5-prime edge 
    TCCACAAATA ATGTAACGAA TCATCTATAT TAATTCGGAC AACTTGAAAG 
    TTTCTATTAA ATTTCTATAT ATTGTTTTCG TCGGCACATG CATCATAAAT 
    GTTTTTAACG GTCTAGCCCA AATAATGTAA CCAAACTTAT TGTAAATCAT 
    GAATACAAAC ATGAATGGCC TTGTATATAT AATAGGCTAA TAGCTGGTTG 
    GTTATAAATG TGACCTATAG TTTAGTTTTT CTTTGTCAAC TAAAAGTTTA 
    TTTACTCTTA TATAACTATG GCATATTCGT TGGTCAAAAT ACATATATTC 
    TATATATCAA AACGTAAAGT TATTCGTTTA CGTTCGCTAN GGCCTANGCT 
    CTAGTANAAA CCATGTGAGC TTGCATGTGA AGTGAACAAA AATCAATTCT 
    TAATATACCG TACTCGATAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 844426 [Map]; Strand: c
      • AT4G01940.1 - [+] show detail - NFU domain protein 1
        Distance: -967; Region: promoter
      • AT4G01950.1 - [+] show detail - glycerol-3-phosphate acyltransferase 3
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 52-0024-1 - 3-prime edge 
    TTTGTGGACC ANTGTTTTAT ATATGCACTA GAATTGCATG AAAGGCAAAA 
    TTGTCTGACA AAGATTTTGG ATATGATATA GAACATATGT GTACATTACC 
    AAGAAAAAAA GATTGTAGTT ACATTTACGT AGACATTATT AATAAACAAA 
    TGAAATAATC GATTGGTTAC TTACATACCC AAAGAACCGA ACTCATCACT 
    CACTCATCAT CCTAAAACAA ATTTTAATTT TTCTTAACTA CTCCATTATT 
    ACCGGCCAAG ATCAAATACT TGTCTTTTCT AGTGAGACTT GTGCACTCGA 
    AATCCAACGC CTTCCCAATA TCACTCTGAA CATTGTTGGC CACCTCAAAC 
    TTCAACTTTC CATCAGGGAT CTTGGCACGT GGCACCGGAG ACANGGTCGA 
    NAAATTGGAT GGTGTAGGTA GGATAAG

AT4G01940.1

Model type
Protein coding
Short Description
NFU domain protein 1
Curator Summary
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.
Computational Description
NFU domain protein 1 (NFU1); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 4565 Blast hits to 4561 proteins in 1155 species: Archae - 11; Bacteria - 2225; Metazoa - 159; Fungi - 160; Plants - 186; Viruses - 3; Other Eukaryotes - 1821 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01950.1

Model type
Protein coding
Short Description
glycerol-3-phosphate acyltransferase 3
Curator Summary
Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.
Computational Description
glycerol-3-phosphate acyltransferase 3 (GPAT3); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 2 (TAIR:AT1G02390.1); Has 384 Blast hits to 371 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 371; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR