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52-0151-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23000039 [Map]; Strand: c
      • AT3G62110.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0151-1 - 5-prime edge 
    CTTTNAAAAA CTANCAAAAT CAGTGATTCC TTCCCAACAA AAGAAACAAT 
    TAATTTATAA GTGTTGTTCA TATTAATACA GACTGGGTTT CTCTTTCTCT 
    CTGGGTTTCT CTCAGTGACC CTCTTTGTCT CTTTGTAACA GAACATCAAA 
    TAAGGTATCT CCAGACATCT TAGATATCAT CGAATCGAAT GTTCTTCTTC 
    TTCTTCTTCT TCTTCTTTAA TTATGGTTTA AAGTCTCTAA TTATATCTTG 
    GTTTTCGTAG GAGGAAGATA TTAAAAAATT GGTAATGGCG ATGATCATGG 
    GTACGGAGAA GGTAGAAGAT GGACCTACTG CTTGAATTTT GGCGGGCAGA 
    AACGGTCTCT TTCAATGATT TTTATGTCCA TTGTGGGTTC CCCAGTTTCC 
    TCTCACCACT GACCCATCTA ATCAATCTTT GCAACTTGCT ACTACTATCC 
    ATCCATCCAT GAGAGAGAAA TTTTTTGTGA TTCAAAGTTT TGATTTTTAG 
    CTACCAATCT ATGAGTGAGT GACTGAGAAA CAGAGAAGGA TTCCAAGCTG 
    CTAAAGATTT TTTGTCAAGA TTTTTAATTT AAGTTTCCTG GAGGAGGAGA 
    TCACAGATCT TCTTTTCATA TGAAGAGATC TTTCCTTGTA AGTCTTTATC 
    AATTTATCTC TTCTTTCTTT GGACATTACT TAGACAATTC CAATGCTCTT 
    GTCTCTCAAA TCTGGTAATA TGTATATATA TCTTTGTCTT TAAGATCTGA 
    AATCTGGTTT AAAGGTTGAG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23000088 [Map]; Strand: c
      • AT3G62110.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -47; Region: promoter
    Flanking Genome Sequence: 52-0151-1 - 3-prime edge 
    ATTTAAAACG GTNGAGGTAT TTTACNGACC GTTACCGACC GTTTTCATCC 
    CAGCGTATTT CATGTGATCC GNNCTAAAAG AATATTATTA TAAAAAGGAT 
    AAAGAGAAAA TTGTGACCTT CAAATTCTTC TTACATCGAA GATTGATTGA 
    TTCTATTGAA GCAAAAAAGG GTTTTTTGAA AAGCTCTGTA ATTCTTTTTT 
    TTTTACTAAT GANACNAANC NCTGTCGTTT AGTTGGAANA ANATAACGGA 
    TCACGTGACN CGNGGCGTTN GGTNTCNTAA GTCGTANCGT AGNGANAGTT 
    GACTGACTCT GCTAATTATN CGTTTTCATA ATTTCAGTTA AAAAAAGATA 
    AAANGGNCNC CANAAAAAGA NCTANAATNG GNGAAGGGAT TTTTTGAAAT 
    TNTNTTCCGA ANTTAGAGAN AANAATTAAT AANACAGGCN TAGTANTGAN 
    ACANACTTGT NGTNGTCTNT AAATAAAACA NTNCANCATC CATAATTNCT 
    ATACTTAATT ACCCCCCCTT TANTTNTTCA GCAAACNTAC CACCNTCNTG 
    GACCGGATTN TNTGGTCAAA ATACCCTNTN TAAACAATTN TTTCAAATAT 
    TCACTATTGA CTAAAACAAA TCAATTTTTT TNTGTAAAAA CAGAGCTTAA 
    TGGNGAGATC CATAGATTAA ATACTATTGA ATATCATCAG TTAATCTATC 
    AATCAATAGT CAATAGATCA AATCTACNCC TGAAAACAAA ACCAAACCGA 
    AACCGAGTCT AAACCAANGT AACCAGGAAA ACCCN

AT3G62110.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR