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52-0198-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8073567 [Map]; Strand: w
      • AT5G23920.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0198-1 - 5-prime edge 
    CTCAACGGAC CACCAGGACG TTGAGTGTCG GAGAATTCTG CTTTAACCCA 
    ATCCAAAAGA GCGAAAATCC TACGAGCGTT GTAGAAAACC GGTCCAAGAA 
    TACCTATTGG CATCGAATAC TTGTCAGAGA AACCAATAGG TTCTGTGAAA 
    GCTTGACCTG AGAGGAGAAA TAGATGTGGT GCGGCGGCTC CAGCACCGTG 
    AATGTCTCCA CGGTATATTC CATCTCCGAT GTAACAAAGA GGGAAGAGTA 
    TGCCTGAGAA AGAGTTTTAT TATTTACAAA AACATTTACA TAAGTATTTG 
    ATGAGAAAAG ATTANTAACC TATAATTGCA GTGGCGAAGA AGTAAGCTTG 
    AAAGANTTTG TTTTTANGGT TTGAGAGTCT CTTCTTCTGT TCTGTTTGCT 
    TG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8073451 [Map]; Strand: w
      • AT5G23920.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0198-1 - 3-prime edge 
    CCGTTGAGAT TGTACGGAGG AAGAGTGATT GCATCGGTTA ACACGGTGAT 
    GTGGTTTTAT AATCTGTTTG GTCTCTTGTT GCCTGTGTTT CTTCCTAGGT 
    CTTGTGAGAT TTACTTCTCC GGTGATAACA AAGATGATTG AACTGATTTG 
    TATTTGTCTC ATTTAGAATA AAAATGTTGA GTTGTTCGTT TTAGTGCTTT 
    GTGTCTTATG TCTCGATCGG GTAAAAGTTT TGGGTCTAAT GGATTATTAT 
    TAATGGAGTA TAAAGCAAGA TATCTCGTCG AAAAAAGAAA CAAAAAATCG 
    TCTTGAACAA AATTAAGAAA GAATGAAACA AGATCACGAA AAACAAATTT 
    TGGTTTTGTT GGCAAAAGCT AGATAAAGTT GAATATCTCT ATATAGAGTA 
    AAATGGGTAA AATGAGTCTT TTACCTAGTG GGTGAGACTT GAGAGTGAGG 
    CATACATTGA AAGTTTATTC CCCACTAAGC ATTCGAATGA TAAAGTGATG 
    TAACCGGTGA AAAATATAAA AATGGAATTT GATACTACTT CACATTGCCT 
    TTGAAATACC CAAAGTTTTG GACAGTACGA CACAAATTGA ATTTAAAGTA 
    TTGTAACCAT AAATTAAGTT CTCATAGTAA CACGCATTAC ACATTCAACA 
    ACTTANCCTT CCTATATAGA ACTTTGAAAT CTTANAACAC CATCNGNGTT 
    GNCTCGCAAT CTCTAAAAAC CTTCATAAAT ATTTTCANAT AA

AT5G23920.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR