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52-0224-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21564040 [Map]; Strand: c
      • AT3G58210.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0224-1 - 5-prime edge 
    ACTCAGGTTC TATGNTACNN CACTATCTAC TAGTTTGAGC TTCAATGGGA 
    AATCTCGTTG ATAACAAGTT CACATGGGTG ATTCAAAACT TCTCGTCTTC 
    CCAATCTAGG GTCGTTCCTT CTAATCAATT CGTTATTGGT GGCTGCAAGT 
    GGTAAACATG ATAAACCTTG TCTTTTAATG TTACAATTTG GATTTTCTCT 
    TTTAATTTGA TGACGGTTCG GATTTCTTTT TTGATGCAGG CGTCTTCTTG 
    TCTATCCAGA GGGATTCAAT AAGTCTGGTG ATCATTTGTC GCTGTTTCTG 
    GAAGTGGCTG ATCCTAGATC ATTGCCACCT GGATGGAGTA GACATGCACG 
    TTATCTTTTA ACTATTGTTA ATCAACATTC TGATAAAATC TCAAAACGAA 
    ACGGTAATTA TATCTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21564155 [Map]; Strand: c
      • AT3G58210.1 - [+] show detail - TRAF-like family protein
        Distance: -88; Region: promoter
    Flanking Genome Sequence: 52-0224-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GCCTCTCCAT ATATGTGTTT CACTTTTGCA CTTCGGCCCA ATTTACAATT 
    GTTGGCCCAT TATAAGATCA ACGACCATAA GAAAAGTCTA AAACACTTCG 
    TGCATCGTGA CTAACAGTGA AATCATCTAA CTACTTCAAT GGCTCTACGC 
    CTCTACCAGA CTGGATGAAG CCAAGACAGT GAGATGTGTC GTGACTCGTG 
    AAACAAACAA AAACTTGATG AACTTATGGA TGAACTGAAA ATTGAAAGCT

AT3G58210.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (TAIR:AT3G58270.2); Has 1155 Blast hits to 996 proteins in 134 species: Archae - 2; Bacteria - 3; Metazoa - 121; Fungi - 102; Plants - 866; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR