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52-0258-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6800627 [Map]; Strand: w
      • AT4G11150.1 - [+] show detail - vacuolar ATP synthase subunit E1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0258-1 - 5-prime edge 
    TAATTTTCTT CATTGATGAA TAAGAAACAT AGTCTGGTTT AGTCTAATCG 
    GCAAAACTGA AGACTAATTT AGCAATTAGT CTGATGTAAG ATTATGGTGT 
    AGTAGTGTAC TGTGTTGATC TAGCTTTCAA ATTCTCTAAT ATTGTTAGTT 
    CTCTGTGAAA ATTATGTTGA TCTTGTTCAT TTACTGTGTT ATCGTGTATT 
    ACTTTGCCAG AAAATAACTC TCATACATGT TTTTTCAGTG ATTACTCTAT 
    GCAGCTAAAT GCATCAAGGA TCAAAGTTCT TCAAGCGCAG GACGATATTG 
    TCAATGCCAT GAAAGACCAA GCAGCTAAGG GATCTTCTGA ACGTTAGTCG 
    CGATGAGTAT GCCTACAAAC AGCTCCTCAA GGATCTAATT GT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12711413 [Map]; Strand: c
      • AT2G29750.1 - [+] show detail - UDP-glucosyl transferase 71C1
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 52-0258-1 - 3-prime edge 
    CCTGAGATTT GGGCTCGTGG CGACCATGTT TCTGTTCAGA TTCCTTTTTC 
    CTTTGTTTTT TTTTTAAATC GTAATTACCA TTTTATTTTA ATAAAANAAN 
    ACTTAGTCTT CTTNTCAAAA GTTTGAACCT TTCACAATTC CATGTGTTTG 
    TAACCTTTGT AGGAATCCAT GATTCCATAT TTGCTTCCAT GTTGTTGTAT 
    CTCCTGNGTA ATTTAAGGAT AAAAAANAAA TAGTCTGCTT TTTAAAGNGT 
    NTCAAACAAA AATCTATTAA GGTTCGANAG ATGTGATTAA AAAATACNAT 
    AATGTNCAAT ANAAATATAT TAGTCTTTTT GGTTACGTAA GCCGTTGGAA 
    TCGCTCAAGT TGATTGATAG AAAATGAAAA CATNCGTTTA NAAGGAAACC 
    AAAAATTGCG TTTTCATTAT GGTTTTACAA AANGTCAATT ATTTTAATAT 
    GNGCATATCA ATCTGTTATT CAACCATCAC AATCTGTTAA CCATTAACAT 
    TTTAGTTAAN GGTCGTATAG TTGATATACT AAGNGNGTTC ATAGTTAACA 
    AATTGGGGAT GAATAAAACT NTAAAACTTT GGGGATGAAC ATATTAAAAT 
    CCGAGATATT ATTACAATGA ATNTGAGTGA AGGATGAACA AAACTCTANA 
    ACTTTGGTTC ATATCTTCTT GATTCATCTG CCTCTGAGGA ATTGTCAAAC 
    CATATGACTC TTCAACATTC CAATATGACG GACGGGGGAT NTTC

AT2G29750.1

Model type
Protein coding
Short Description
UDP-glucosyl transferase 71C1
Computational Description
UDP-glucosyl transferase 71C1 (UGT71C1); FUNCTIONS IN: quercetin 3'-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C2 (TAIR:AT2G29740.1); Has 7500 Blast hits to 7461 proteins in 403 species: Archae - 0; Bacteria - 348; Metazoa - 2171; Fungi - 25; Plants - 4881; Viruses - 17; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11150.1

Model type
Protein coding
Short Description
vacuolar ATP synthase subunit E1
Curator Summary
Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis.
Computational Description
vacuolar ATP synthase subunit E1 (TUF); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 18 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar H+-ATPase subunit E isoform 3 (TAIR:AT1G64200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR