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Mutant Lines
52-0375-1

52-0375-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 644232 [Map]; Strand: w
  - AT1G02880.1 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon2 (5UTR)
  - AT1G02880.2 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon3 (CDS)
  - AT1G02880.3 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon2 (CDS)
  - AT1G02880.4 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon2 (5UTR)
Flanking Genome Sequence: 52-0375-1 - 5-prime edge
```
TTTATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
TCGTAGATGC GATTAGCGCC TCCATCAGCA CAGAGACGAA GTTTTGCTGC 
TCTACACAGA AAATTCGAAA CCAATTTTAG AATAACCCCA AGAAAACAGA 
GTCATATATA TTCTGAAGAA TAGAGCGATT CATCAGTACC ATGTTCCCAG 
AGAAGAGGAG TGAATCGTGG CAAACTCTGG TTCAGAACAA CGAGAGCGTA 
TCTCGTCCCT GTACTAGTTT CGTCGCAAGG GAGGAGAAAG CT
```
3 prime edge [+] show sequence
1. Chromosome: 1; Position: 644160 [Map]; Strand: w
  - AT1G02880.1 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon2 (5UTR)
  - AT1G02880.2 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon3 (CDS)
  - AT1G02880.3 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon2 (CDS)
  - AT1G02880.4 - [+] show detail - thiamin pyrophosphokinase1
    Distance: 0; Region: exon2 (5UTR)
Flanking Genome Sequence: 52-0375-1 - 3-prime edge
```
GACGAATTGG CTCTCTTCTG NCCTAATGAA GACGCTTTGG CCATTCGAAA 
CNGGTCCAAC TTTCTGAAGC TGTATCTCTC GCTCTCTTAC TCGTTCTTCG 
GATTTGAAGA TTATTATTCA AATTTAGTGA TGGTTTATTG GAATAATTAG 
TCTAAATTTG AGCTGGAGAT ATTTTTTTTG TTTGAGTTCA TANATTCACC 
TTCTTCTTAT CTTTATGTAT ATTACATAGA GAAAGATTTC ATGAAGAAGA 
ACTTGTATTT TAGGTATNGC CGGATGTTNT CAAAGGAGAT ATGGATTCTN 
TACGTCGTGA CGTCCTCNAC TTTTATNTNA ACTTGGTAAG CTCTTA
```

AT1G02880.1

Model type: Protein coding
Short Description: thiamin pyrophosphokinase1
Curator Summary: Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description: thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0; Bacteria - 615; Metazoa - 133; Fungi - 131; Plants - 88; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G02880.2

Model type: Protein coding
Short Description: thiamin pyrophosphokinase1
Curator Summary: Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description: thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1306 Blast hits to 1304 proteins in 531 species: Archae - 0; Bacteria - 677; Metazoa - 135; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G02880.3

Model type: Protein coding
Short Description: thiamin pyrophosphokinase1
Curator Summary: Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description: thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1298 Blast hits to 1296 proteins in 527 species: Archae - 0; Bacteria - 670; Metazoa - 134; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G02880.4

Model type: Protein coding
Short Description: thiamin pyrophosphokinase1
Curator Summary: Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description: thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR