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52-0589-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16082982 [Map]; Strand: c
      • AT4G33410.1 - [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-0589-2 - 5-prime edge 
    TTCAAAAAAN AATTTAAAAC GTNNNAAAAC TAACAAANCG GTTATNCGAT 
    AACGGTCGGT ACGGGATTTT CCCATCCTAC TTTCATCCCT ATCTCACTAT 
    ACTTCACACT GATCAAGCTC TTAAAATCAT TGGATTGAGA CTACAAAGAT 
    TCTATCAACA AAATTTCAGT TGAATCAAGT GTTGATATCG GTTGTGCACA 
    AATACACNGT AGTAGAATAT ATACTTTTGA TGTTAGACCA AGAGGAACAA 
    AGAAGTCACA TGAGGAGAAT ATTACCAGAT AAAGTAGAGC TGGCTGAGGT 
    GAGTGGGTCA AGACACCTGC AGCTAGAGCC GCCACCAAGC CAATGGCATA 
    TCCGGGAAGT GCATACCAAA TGTATTTGTG TCCCTTGGAA GATTTTAGAT 
    CAAAAATATT CACCACATCT CTAGTTTTTC GATGGTCAAA GCAGAGGACC 
    AAAGCCAAAA GCATTGCAGG GATAGCCTGG AACAACAAAA CAGTTAATCA 
    ATACAACATG TTTTTTTTAT CTCCTCGTCA CTATAGTCTG AGAGAGAACA 
    TTTCTTACAG TTAGTACACA TATAACGACA TACCAATCTT AAAATCAAAG 
    AAGGGATTAG TCTGTACCAT GTCACCAAGA CCAAGCATCA TGAAATCTGA 
    GGCACTCACA CCGGGCACCA CACCGCCCAA TAGGTTCCGA GGAAACACAA 
    TTTTAACAGG TAGTTCCAGT TTCTTTGTGA TCAATTGCAG TCCAGGAAGA 
    TTCAAACTGT TAGCCACTGT GTGAACTGGG TTTGATGCTT GCTGGGTTGC 
    CACGGCCACC AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16082958 [Map]; Strand: c
      • AT4G33410.1 - [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-0589-2 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CATCAGATTA TGATGTATAA TCTGTTTTCG ATGTGGATAT ATAGGTACCA 
    TCTACGTTAG GACCGGTGAT CTTCATGTCA TGGCGGAGAA AGGATCTTGC 
    GGAGCTGTGG GAAGGACCTG CATTATCTAA TCCCATTGAG AAATCTCATG 
    AAATAGAGAT CTGAGTTTAT TATATCAATC AAGATGATTC AGAAATCTAA 
    AACATATTAC ATAAAACAAA GACGCNTTAG TAGGAAAACA TCAGATCAAG 
    AATT

AT4G33410.1

Model type
Protein coding
Short Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 1
Computational Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (SPPL1); FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endosome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR