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52-0621-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2211411 [Map]; Strand: c
      • AT5G07130.1 - [+] show detail - laccase 13
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-0621-1 - 5-prime edge 
    CCCTGAGGAG GACTATCTCT CCTGACCCCA CTAGAAATCT TAAAGTTTCT 
    GCAACATGAC AAGCACATAA TATTAACCAA CTAAGATGTA GCTGCTTGTG 
    GCGCATGGGA AACATAAACT AAATCTGTAC CTTGGCTGGA GCATCTGTAG 
    AGATCACCAG GCTGACCATT GATGGTAAAG GCGTCTGAGA TGTTTGGTGC 
    TGCTCCAGTG AACTGGGCTA AGTTGAGGAC ATCCATGGGA TTTCTGTCCC 
    ACCACTCTCC TAAGAGGAGG GTAATCTCTC TCTTGGGAAT AACTGGAAAA 
    GGGTAATGAG GAGAAGAGAG CGGAGGGCGG ATAATGAGAG CACCATACAC 
    GGTGGCTCGC AGCCATCTAC TGTGGGCATG CCACCACAAT GTACCTTCTT 
    GGTCTTCCAT GGTAAACCTG TAGGTGTAAC TCCCTCCTGG TTGGATTGGG 
    CACTGGGTTA TGTATTCTGG TCCATCCGCC CATGGATTCC TCATCTGCCG 
    TATCCCATGC CTGCACATGG TCTGATTAGC AGACTATCTA GCGATAAAAC 
    ATTGATTGAT TTGATGCAAG GAAAGAGTGA GTTTACCAGT GAAGGCTGAT 
    GTTGTACCGA GCTTTGTTTA TGGCTGTAAT GACAAGGGAA TCGCCGTTCC 
    TCACCTCCAA GGTTGGCCCT GGAAACTGTC CATTCACCGT GATCGAGTTA 
    TGGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2211527 [Map]; Strand: c
      • AT5G07130.1 - [+] show detail - laccase 13
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 52-0621-1 - 3-prime edge 
    CCTCAGGGTC ATCAACTCTG CTTTGAACCA AGAACTCTTC TTTGGTGTCG 
    CGAATCACAA ACTCACAGTG GTTGCGGCGG ATGCCTCCTA CACCAAACCA 
    TTCTCGACCA ATGTCATAAT GTTAGGTCCT GGTCAGACAA CTGATGTGCT 
    TCTAACTGCA GACCAACCGC CAGCACACTA CTACATGGCA GCACATGCCT 
    ACAACAGTGC CAATGCTGCC TTTGACAACA CCACAACCAC CGCAATCCTC 
    AAGTACAAAG ACGCCTCCTG TGTTACTCTT CAAGCTAAAT CACAGGCACG 
    GGCAATACCC GCACAACTAC CAGGATTCAA CGACACAGCA ACAGCAGCAG 
    CCTTCACAGC GCAGATGAAG AGTCCTTCGA AAGTAAAAGT GCCCCTGGAG 
    ATTGATGAGA ACTTGTTTTT CACAGTGGGA TTGGGACTAT TCAACTGCCC 
    AACCCCCAAC ACACAAAGGT GTCAAGGCCC TAACGGAACA CGCTTCACCG 
    CAAGCATCAA CAATGTCTCT TTCGTCTTCC CCAAACAAAA CTCCATAATG 
    CAAGCCTATT ACCAAGGCAC TCCCACAGGT GTTTTCACCA CAGACTTCCC 
    TCCAACGCCT CCTGTCACAT TTGACTATAC AGGAAACGTG AGCAGAGGGC 
    TATGGCAGCC TACTCGCGGA ACAAAGGCCT ACAAACTAAA GTTCAATTCG 
    CAAGTGCAGA TTATATTGCA AGACN

AT5G07130.1

Model type
Protein coding
Short Description
laccase 13
Curator Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description
laccase 13 (LAC13); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 3 (TAIR:AT2G30210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR