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52-0669-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16898167 [Map]; Strand: c
      • AT5G42260.1 - [+] show detail - beta glucosidase 12
        Distance: -545; Region: promoter
    Flanking Genome Sequence: 52-0669-1 - 5-prime edge 
    TGAAAANGTT NCGNNCTNNC GTANCCGNNN NAAAACGGTT TTTTGATANC 
    GGNAACGTAC GGGATTTTCC CATCCTACTT TCATACTTGN TTNAAGGCGA 
    CCAAAANTTC AACATCAACG AAAGCAATAG AAATTGTTGA GGATAAAAGA 
    GTGTCGCGTG AAAAGAAGAA TGACTGTTGG AATGGTAAAA AGGTGCCTGC 
    CTGCGACCTG CTTTTCACAG TGTTGGCCGG TGTTACTCTC CACATACTTG 
    GAGTCTCCAG TAGTTACTTA TATTTTTGTG TCGCGCATCG CTGACGCTGN 
    CNCNNCGATC ATGAAAAAAA CATGACTATT GTGTACACGT TCCAGTACAC 
    TCTCAAGCTA CAGTAAAACA TAGGAACATA GAGATAAATT GATATTCTCA 
    TAAGAACGAG GAGATTTGCT TCTGAATTTT TTTTATTAAA CATTGATATA 
    ATTTAATTAT CTTTTGATAG CTTTCAAAAT ATTCTTCTTC TTTGACACTC 
    CTTTTTTGGT AACAAAACAA AGTNCAAATT ACANTACCAT AAGATGAAAA 
    AACAATTTCT TGTCCTTTGC CTATTTTCAT TACAATTCAT TGACTTTTTA 
    TTTTGCTGCC ACTTTGGCAT TTGCTTGTTT TGATTACCNA CCAATAAANN 
    TNGTTTACCN TGAAACATAT GAAATTGATG CCAAAGATGG GAAAGATAAN 
    ATAAGTCANT TCACTTAGCC CATCCCTANG ACACACCTAA TGCNTTTCCC 
    TTCANGAAGT ANCCTGGAAT GCCGCCGTGG ATCCTCCTNG AATTTAATAA 
    TAANGAGAAA NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23420551 [Map]; Strand: w
      • AT3G63430.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0669-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGGGAAAGA GAGATAGACA AGTTACCGGA GAGGAAGAGA GACGCTTATT 
    AGGAGAGAGG AGACTGGGGC AGATCGAAGA TGTTGAAGAA GCCGGCCATG 
    CAACCGCCGA TTTGCTTCTC CAGATC

AT3G63430.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42260.1

Model type
Protein coding
Short Description
beta glucosidase 12
Computational Description
beta glucosidase 12 (BGLU12); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR