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52-0847-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15992157 [Map]; Strand: c
      • AT5G39950.1 - [+] show detail - thioredoxin 2
        Distance: -226; Region: promoter
    Flanking Genome Sequence: 52-0847-1 - 5-prime edge
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTGATTTAG TAGTTGTCTT GTGTTCCGAG TCACTTAAAT
    TGCTTTTTTA ATTTATATCT AAATGAGTAT ATGAGTTTAA ATGGGCAATT
    TTATAAATCT TAAAATTAAA TAATTTTAAA TGGGGTAGAT TTTAAATGGG
    CNGTAAAGTG GGCATGCCCA TAGTTGACCA GCTCTAGTGG TAGAAACGGC
    ACGATGTTTG AATATTAAAC GACACGATCG TTGACCAAAG AAAGCAGGGT
    CGTTCTTAAA CGCAATCAGA GAGAGAAGCG AGACGAGAGA CGATAATGGG
    AGGAGCTTTA TCAACTGTGT TTGGAAGTGG AGAAGATGCA GCAGCTGCAG
    GGACTGAATC TTCCGAGCCA AGTCGCGTCC TCAAGTTTAG CTCTTCCGCT
    CGGTGGCAAC TTCATTTCAA CGAGATCAAA GAATCAAACA AACTGGTAAC
    GTCTCTTAGA CTCTCGATTT GATTCAATCG ATTTCGTGTT TCAATGGAAT
    TTAACTGATT TGGTTTCTGT GAATAATAAA GCTGGTGGTT GATTTCTCGG
    CTTCATGGTG TGGACCATGT AGGATGATTG AGCCTGCGAT CCATGCCATG
    GCTGATAAGT TCAATGATGT TGATTTCGTC AAATTAGATG TTGATGAACT
    TCCTGTAAGT ATCTCTCTAT CATAAAGTCT TCATCTTTCT TTTTGTAGTG
    CTATCAATAG TTTCTGACTT TATCTGTCTC TGATTGATCC ATAGACTATA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15992225 [Map]; Strand: c
      • AT5G39950.1 - [+] show detail - thioredoxin 2
        Distance: -294; Region: promoter
    Flanking Genome Sequence: 52-0847-1 - 3-prime edge
    GTCTAACCTT NNTANNAAAC ATACTAAAAT CAACACTTAC CATCAAATTT 
    CAAATTCTTA CCAATCGAAA GACACTAATA TCCATAAATC AAACTCAAAC
    ATGTTCAAGT TTTCAAACAC AATAAGTTTT TTATTCTTCT TAGTTCCAAA
    ACATGTTGCT TCTTCTACAT CNTGTTTCAT GGTNNNCTTG AATTTTCTGA
    TCTTGAAGAT TCTGCTCGGG TACTAATTTC AATCATCCTT GCATATTGGT
    TGCAAATCAT CAATGTCTTT TAGGGTACCT ACAATTCAAA GTATGAATTC
    GTTTTAAAAC ATGATCACTG CAAGAAACCT CGTTTTAAAA CATAACTACA
    CAATAT

AT5G39950.1

Model type
Protein coding
Short Description
thioredoxin 2
Curator Summary
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Computational Description
thioredoxin 2 (TRX2); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: N-terminal protein myristoylation, sulfate assimilation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 7 (TAIR:AT1G59730.1); Has 19714 Blast hits to 19583 proteins in 2950 species: Archae - 262; Bacteria - 11021; Metazoa - 1828; Fungi - 880; Plants - 1790; Viruses - 14; Other Eukaryotes - 3919 (source: NCBI BLink).
Link
InterPro Scan - TAIR