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52-0953-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12844601 [Map]; Strand: c
      • AT1G35115.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0953-1 - 5-prime edge 
    ATNCTCNAGA AGCAGTTTAG CAAACCAAGA TCTGTCATCT CGAACTCGTC 
    CTTCATGTTC TTCTTGAATG TGTTGATGAG ATGAGTGTTG CTTCCAATGA 
    TGATAAGATC ATCGACGTAC AAGCTAACGA TCAACACGTC TTCTCCTTTC 
    TTCTTGATGT TTTTTGCTGC ATCATTCATG CTTCTTGCAA AACCATTTTG 
    AATGAAGTAA AAGTCAATTC TTTCATACCA TGCACGTGGA GCTGGCTTAA 
    NACCATATNA AGCTTTGTAA AGCCTTAACA CCTTCTCTTC TTTGCCTTCC 
    ATCACAAACC CAGGTGGTTG TGTGACATAA ACTTCTTCTT CAAGCTCTCT 
    G

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12844717 [Map]; Strand: c
      • AT1G35115.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0953-1 - 3-prime edge 
    CTTGGAATGG AAGTAAATCA AGATGACAGT GGCATTTTTC TTTCACAAAA 
    AAAATATGCA AACAAATTTA TTGATAAGTT TGGGATGAAA GAGAGCAATA 
    GTGTAAGCAC CCCACTTACA CCACAAGGGA AAAGAAAAGG AGTAGAAGGT 
    GACGACAAAA AATTTGCAGA TCCAACAAAG TACCGGAGCA TTGTCGGAGG 
    ATTGCTCTAT CTATGTGCAT CAAGACCTGA TGTGATGTAC GCAAGTTCTT 
    ACCTATGAAG GTACATGTCA TCACCAAGTA TACAACACTA TCAAGAAGCC 
    AAACGAGGGT TGAGATACGT CAAGGGAACG TCAAGCT

AT1G35115.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.1e-168 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR