1. Home
  2. Mutant Lines
  3. 52-1001-1

52-1001-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29545552 [Map]; Strand: w
      • AT1G78540.2 - [+] show detail - SH2 domain protein B
        Distance: -775; Region: promoter
      • AT1G78540.1 - [+] show detail - SH2 domain protein B
        Distance: -787; Region: promoter
      • AT1G78550.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1001-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC GATTGCGGGT AGTAATTAAT CTTGATAGAT TGCCAAACAT 
    CATCAAACAA ATCTTCCATT TCTTCGNGTT TGATCTCAAG AACACTCGCC 
    ATTTTCGCAA ACAGAATCTT AGCTATGCTC TTCACTTCAG AGGAGTAAGT 
    CTCTAAAGTT TCTCTGAAAA CAAAAACGGA TTTTTCAGTT TACAGTTGTT 
    AGAGACTAAT TCGTAATCAC ACAACTACAA CAAGACTCGT ACCTGAAAGG 
    AGGAGGTAAT TTGGAGAACA AGTGAGATTT ACGTGATCGA ATTGGTTCAG 
    TGGTGAGGAT AAACATGTCT CCCCAATCGA GTTTCTGATT CTCCGAGACA 
    ATGTTCACTT GTCCAAATCC TTCAAATTCA CCACTTCTCT GCCACAACTT 
    CTGCTTCTCT TTCATAGGGA GATTGAAGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 619356 [Map]; Strand: c
      • AT3G02840.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-1001-1 - 3-prime edge 
    CGCTTTGATC GTTCCTCTTC TGGTGAAGAA GATTCTTAGA GTTTCGGATC 
    TCGCGACACA ATGTTCGGTT TCGATACTTT GGAAGCTATG GAAGAATAAG 
    AAAGACGGAG AATGTGATGA TCGTTTGTTA GTTGAAGCTC TTCAAGTTGG 
    TGCCTTTGAG AAACTCTTAG TGCTCTTACA AGTCGGGTGC GAGGATAAGA 
    CGAAGGAGAA AGCGAGCGAG CTCTTGCGGA ATTTAAACCG TTGTAGAAAC 
    GAGATCGAGA AGACAAATTG TGTCGATTCT TCAATGCATT TGAAGAATGT 
    GAAGAAATCA TTTTAGTCAA ACAAACAAAA CACACTATTA TTCTTTGTAA 
    TTACTCTGTN TNTAAATAAA CTGATTTTTT GAAATTTGCT CGAATCATTA 
    TGTTTCAACA GCCAAATACA GTTTTTGNNC ATCACTTATC AAATCTACAT 
    CAATAANGGN GGCTTCTTCT TCNGANNNTG CNCAAGANGC CTCCGGAACN 
    TTCNNCCGCT CCTTTGCTGN NNTTATNANC TCCTNNNNCT NCNANGGANN 
    NAAAAAAAAA ANCCNNGNNT NNTNNNCTCN NTCGAANNAN TTTTTTTGTG 
    GAANNAACAC CGNNCAAGGN NNCNNAAGGN CTNNNNNNCN AAAANNNNNN 
    TTTTTTTTNC NNNAAAAAAA ANNGNGGGNN NNNNNNCNCC NGNNCNNNNT 
    TTTTTTNNNN NNNNAAAAAC AAAAAAAAAA A

AT1G78540.1

Model type
Protein coding
Short Description
SH2 domain protein B
Curator Summary
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description
SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1); Has 144 Blast hits to 142 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78540.2

Model type
Protein coding
Short Description
SH2 domain protein B
Curator Summary
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description
SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1).
Link
InterPro Scan - TAIR

AT1G78550.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8641 Blast hits to 8595 proteins in 1007 species: Archae - 0; Bacteria - 1122; Metazoa - 113; Fungi - 972; Plants - 4984; Viruses - 0; Other Eukaryotes - 1450 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02840.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to other organism, response to ozone; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 423 Blast hits to 423 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR