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52-1089-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30011737 [Map]; Strand: c
      • AT1G79750.1 - [+] show detail - NADP-malic enzyme 4
        Distance: -344; Region: promoter
      • AT1G79760.1 - [+] show detail - downstream target of AGL15-4
        Distance: -311; Region: promoter
    Flanking Genome Sequence: 52-1089-1 - 5-prime edge 
    ATCCTCACAG GATGGGCATC GAGTGTGACA CAAGTCCAAG TTGGAAGAGT 
    CCTTTTCTGT CACATAAATA AAAAAATAAA TGTCAAGTAG AGAGGGCAAG 
    TGGTGAATCT CTCTCATACC AATTCCAAAC CAACTAAATC TACTTAGTAC 
    CAGTACATTG ATGGTAGTTG CATTTTCGCT TGAAATTGTC TGTCCTTTTG 
    CTAGTTTGAG TCACAATTTT CAATTGAAAA GAAATAAGAG AGAGAGGTCA 
    GAGTCAACGA AAAGTTATAA TTTAGATTTT GTGGGCTAAA ATTGACAAAA 
    GCGTACCAAT ACAGGGACCG GTGAGCAATG GCAAATTGGT AAATAAAGGG 
    AGAAGCCACT TTGTTAGCCA AAGCTATTGC TGGAGAAGCT GGTTTACCTT 
    TCTTCGCGGC AAATGGAACC GACTTTGNTG AGGTGAGTGA TTGATTGTGT 
    CAACATGAAT AACAGTGCTA AATATCTTGG TTTTTTAAGG TCTTGAGTTA 
    ATGGAGTTTT CCTGTTTTTG TTTAAATCTC TCACATGTTT GTAGGAGTGG 
    GTGCATCTCG TGTAAAAGAT C

AT1G79750.1

Model type
Protein coding
Short Description
NADP-malic enzyme 4
Curator Summary
The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.
Computational Description
NADP-malic enzyme 4 (NADP-ME4); CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADP-malic enzyme 3 (TAIR:AT5G25880.1); Has 9573 Blast hits to 9553 proteins in 2441 species: Archae - 143; Bacteria - 6332; Metazoa - 610; Fungi - 220; Plants - 473; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79760.1

Model type
Protein coding
Short Description
downstream target of AGL15-4
Curator Summary
Identified as target of the AGL15 binding motif CArG.
Computational Description
downstream target of AGL15-4 (DTA4); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR