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52-1103-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7683252 [Map]; Strand: w
      • AT5G22950.1 - [+] show detail - SNF7 family protein
        Distance: 349; Region: intergenic
      • AT5G22960.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 762; Region: intergenic
    Flanking Genome Sequence: 52-1103-1 - 5-prime edge 
    CGNGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATGAC TGATATGAAA AGGGAGATAT ANATTTCCAC 
    TCGAAAATAT ACTTCCCAAC ACCGAACCGA ATCAAAAGAA TAGAAAATTA 
    GGNACGGCGA CATGACACAT GAGGAGAGNC CAGGTNGGGA NGGCGNNNNC 
    CCGCGAGGGG GNGNGCCNGN GGNNGGCTNN NGATGNGNNN GAGGAGNNNN 
    NNGNCNAAGG TGGNANGNCC CCANGNGAGG NAGCGNGNTT GNNTACNCGN 
    NNCNNNAGNT NNGTNTNNAN CGGNNNNNNG CGCGNGNGNG GGGCNNNGNC 
    NNGGNGGCNA GGNNCGGGGG GNGNNNNNAN NGAAANGGGN NGNGNANNGG 
    GNNGGGGGGG NNAANGNANN NTNNTGNNNN NACCCNCNCG NNAGGGGGGG 
    GGGGCNNAAC NANGNNNNNG NCGNCNNGNN CCNNNNGGNN GGCNNGNGNG 
    GGNGGGGGGC CGGCNCNCCC GCNGGNGAAN ANAGGCNGAN NGNNCGCGCN 
    ANNGAGATGG GNGGGGGGGN CGCNNGGGGG GNCNGNNGGN GNGNCCNNNC 
    NNGANGNNGG GNGGGGGGGG GNGGCANNNG GCNGGNCNGG NNNGGGANAC 
    GAGGGGGGGG GGGGGGAAAA AAAATNCNNG NGGGNGNCAN AAAAANAGGG 
    GGGGGGGGGT NNNNGTTNNN NCCNCNANNN AAANCCNNTN NCCNGTGGGG 
    GGGGNNNAGN CGCAAGANNG ACANAGNGTG GGGGGGGGGG NGAAAANAGA 
    NGNNGNNTTC NGGGGGGGGG GGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7670331 [Map]; Strand: w
      • AT5G22930.1 - [+] show detail - Protein of unknown function (DUF1635)
        Distance: -1016; Region: intergenic
      • AT5G22940.1 - [+] show detail - FRA8 homolog
        Distance: -6607; Region: intergenic
    Flanking Genome Sequence: 52-1103-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCAAAT 
    GTGAGTAGTG AGAGCATTTC TTCTTTTATT CCACGAGTAG TGATCGATTT 
    AATAATTGAA AAAGGGATTC CATATCAACT TTTCTCAATA TTTTGGTGGG 
    AAAAGTTTGG TTACTTGCCT CTTTTGCTGA CTGTGGAATC CACCTTCGCA 
    TTGACTCTAT GCTTCTTTGA TTTCTAAACA NAAAAAAAAA NAAAAAAAAA 
    ANGGGGGGNG NAAAAACCTT TCNTCCCNGN TTTTTTNGGG NCTCNCCNNT 
    TTTTTTGGNA CAAAACNAAA AACNTNATTN NCCCNNCCCG NAAAACCCNA 
    AAAAAAAANC AAGAANCTTT ACCNAAANTN NAANCTTNNA NGGGGGGNNG 
    GNAAANCCCA AGCCCNNAAA CCNACCAGAT TTGGNCCCAN GGNTTTTTTT 
    CCCCCNAANN CCTTCCGGGA AAAAAAAAAA AAAAAGGGCA AANCCTNTNC 
    CAATNTTNTT TAAANAAATC CCCCCNNTCA AATTTTTTAA AATNNNTNAA 
    GGGCNCNAAA CCTAACCTNN AANCAAANGN NNNAAAANNA TNGAAAAAAC 
    NCTNAACCTT TANTTTTTTT TTNAAACCNT NTNAAANCTT TAAGGGACAA 
    AATTGGCCGN CCCNGNGGCC CAAAAAACTG TTTTGNACTT GNGCGGTACN 
    CANATNTTTN NANTTNGGNG ANANATTTNG NNCTTAAAAA ATNGTCAAAA 
    GNNTNGGCNG GTG

AT5G22930.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1635)
Computational Description
Protein of unknown function (DUF1635); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1635) (TAIR:AT3G44940.1); Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22940.1

Model type
Protein coding
Short Description
FRA8 homolog
Curator Summary
Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase.
Computational Description
FRA8 homolog (F8H); CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G28110.1); Has 1434 Blast hits to 1412 proteins in 109 species: Archae - 0; Bacteria - 10; Metazoa - 314; Fungi - 4; Plants - 998; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22950.1

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
VPS24.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22960.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 48 (TAIR:AT3G45010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR