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52-1199-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6180035 [Map]; Strand: w
      • AT4G09810.1 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: -2742; Region: intergenic
      • AT4G09820.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1988; Region: intergenic
    Flanking Genome Sequence: 52-1199-1 - 5-prime edge
    CTGAAGAATC ATAAATCACA TAGTTTTAGT CAATGTTACA ATACACACGA 
    CTAAAAGAAA AATTACAAAA TTTTATTGAT AGAATTTAAA ATATACCACT
    AGACACTAGA CTTTTGTCTT TTCATTAGTC ATTACCGCTT GATATTTTTA
    CTATCTTACG CATGTTATGA AAGATTATAA AGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6179919 [Map]; Strand: w
      • AT4G09810.1 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: -2626; Region: intergenic
      • AT4G09820.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2104; Region: intergenic
    Flanking Genome Sequence: 52-1199-1 - 3-prime edge
    TTCTTCAGAT CTTGAGGAAG AATTTACATT ATCTACAAAA AAAAGGGTGT 
    AAGTGATGGA GATAGACAAA ATTTATTGCT GTGATGCTTT ATTAGCTCAT
    CTAATATGAA ATTGACAGAT TTACTATTCT TTTAGTGTTT GGTTTTTGGT
    TTAATTTGTT TCTTTGAATG TAGCAAGTTA AGACTTATCT CACCAAATAT
    ATATATATAT ATATATATAT ATATATATAT ATNTTTTTTT TTTNTNNNCN
    CNCNCCCNNT ATATATATAC ACACACNTCT CNCGGGGANA AAAANNTCTN
    TNTNTGNGNG TNNNANACAC ANNATATCTC TCCCNCNGNG NNNGNNNCNN
    ACGNGNGTAT ATANNNGNGT GNTTNNCTCN CNCTANAAAN NGAGNGNATA
    NANNNNCCGN GNGNGNCNCN CTNTNTATAT ATGTGNGTNN CNCNCAAAAN
    ATNTCCCNCG CNNANNNANN CCCCCNCGCN NNGNGNCACG CGCGCNCNNT
    ATATANAGAN ANGCNNNCAN CCTTCTTCCC CCNCNGNCCT CCTNTTGTTC
    CNCCGNGGGG GGNNCTCTTG CATGCACCNN CNTCNCCNCC ANCGANNTCC
    NNCCNCNNNC GCTCTNANNC CTNNATAANC CCNNNCNGCT TCTNTGNCNG
    GNTTCTGNNT NNCNCGTCNA CGCNCCCCCN TCCCTNNAGC AAGAAAACCN
    NAAACCGCGN NCAANCANGN CNANATNNCN NCNNTTTNCN NNCTNTCCCG
    CNCANT

AT4G09810.1

Model type
Protein coding
Short Description
Nucleotide-sugar transporter family protein
Computational Description
Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G34020.1); Has 1601 Blast hits to 1598 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 204; Plants - 929; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09820.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.
Computational Description
TRANSPARENT TESTA 8 (TT8); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome differentiation, regulation of flavonoid biosynthetic process, regulation of proanthocyanidin biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, micropylar endosperm; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 2828 Blast hits to 2555 proteins in 185 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 73; Plants - 2682; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR