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53-2005-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18004650 [Map]; Strand: w
      • AT4G38480.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2005-1 - 5-prime edge 
    ATNCTCCACT ATGCTGCTGA TAAGCAGGTA CCACTCTGCC TCTCCTCTTC 
    ATACCTCCTA CCGCGAACCA CACCTCTTGA TAGCTCCTCA TGTTACAACT 
    AGCTTATGTT GATTTTTGTA ACAGGTCCGC TATTCCAAGA TTCTTGAATC 
    TGGACAGGTA GAGACTTCTT TGTTGGGTAA GCATCAAGGA CCCGTCCACA 
    AATTGGCTGT TGAGCCTGGA AGTCCTTTCT CATTCTATAC TTGTGGTGAG 
    GATGGGGCTG TCAAGCATGT GAGTTGTATT TTTCATTTTG TTTTCTTATC 
    GTCTGTTTTT ATACCTAGGC CGCCTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18004534 [Map]; Strand: w
      • AT4G38480.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2005-1 - 3-prime edge 
    GTGACAATGG TACGATCGTC AGAGAAAGGC ATAAATTTGG CTTGGAAAAT 
    ATTATTGAAG TGGCCGGAAT CGAAGGAGAG TTTGACAGAA GCAGTCTGCC 
    AATCCCAAAG AATAACTTGT CTGTCATCAG AACCAGAAAG CAAGATATCT 
    CCATCAGCAT TGAAACTCAC TGTGTTTACA CATCCCTTAT GCTTATCAAG 
    CTTCTTGTCA AGTCCAAGAC GCCGCAATAG ATCCTGCTTT TGTAAAATCA 
    TCAATATCTA ATTAAGATAG TTGTTTGGTT TCCTATCACT AGACATTTGG 
    ACAATAAAGA TTTTATCATT TGCAAACACA TTCTTCTGAA AGCAATTAGA 
    GTA

AT4G38480.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR