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53-2116-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18154365 [Map]; Strand: c
      • AT4G38940.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 251; Region: intergenic
      • AT4G38950.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 30; Region: intergenic
    Flanking Genome Sequence: 53-2116-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA ACATGTGTTA TTGAAGAAAA CAACGATAGT 
    TGGTCTCACA GTAAAGAAAT ATAAATCTTT GAGCAATCAC CAAAATATTC 
    CTTACAGTAC AAAAATATAT GCATTTGTTA TTCTTCCTAG ATTATACATG 
    AAGTGTAGTT GTTTACTCCA ACCTGCTATG CTGGATACGA TTCTGTCAAT 
    TTGAGACTCT TATCTATCTC TAAGTTTTGA ATCACAAGAG AAGACAGAAG 
    CAGCAGCAGG AGAGGGACTC TATTAACAAA TGTAAGTAAG ATTTCCCCCA 
    CCAAACACAA CAACAGTATA CCATACAAAC ATACGCTAAT AAAAAGAAGA 
    TTCCAGGGAA GAACATTCAT AAGCTAGTAA AACACACAAG AACAAGCAGG 
    GGACACAAGT CTATTACAAC ACAAGATCAG AGCACAACAG CTACACAATC 
    CATTATGTGA AAATTCCCAC TAAGCACAAC ATTACACCAC TCCACTTTAC 
    CCCAAATCTC TCCACCCTCG CGTCTTTCCA CTGCGATTTC CGCACACCAA 
    ATCTCTGTTT TCTCTGTTTT CTGCAAGAAC AGAACCAATT TCCCACCGGT 
    GTACTCACAG TTTTGGACCA CTTACAAGCC ACAGGCAACA ATCCTTCAAA 
    ACCTTTAACG ACTCCCCAAG CTCTCTGCTT TGGATCATAA GCTCTCAACA 
    ATTCTCACGA ACATCATAGT

AT4G38940.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G10510.1); Has 1232 Blast hits to 1193 proteins in 71 species: Archae - 4; Bacteria - 55; Metazoa - 149; Fungi - 0; Plants - 1016; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38950.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based process, microtubule-based movement; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT2G21300.2); Has 9938 Blast hits to 9516 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 4372; Fungi - 1331; Plants - 1857; Viruses - 0; Other Eukaryotes - 2378 (source: NCBI BLink).
Link
InterPro Scan - TAIR