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Mutant Lines
53-2550-1

53-2550-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 29544716 [Map]; Strand: c
- AT1G78540.2 - [+] show detail - SH2 domain protein B
  Distance: 0; Region: exon1 (5UTR)
- AT1G78540.1 - [+] show detail - SH2 domain protein B
  Distance: 0; Region: exon1 (5UTR)

AGACGATACG AACCGTTATA TTAACAGCCG TCGACGAAGT TCACAAGACG 
CGACGCCGGA GAGAAAAAGT CGAGGGATCA ACACTTTCGA CGATTTTTCA 
TTTCTCTTTT TAACTAATCG ATAGGTCTGT AGTTGTAACC AGCAAAAAAA 
GAGAGGGTTT TCTTGGTTTA TAAGGGTTTC GTATACAAAG TCGAGTTTTT 
TTGGGGTGAA GTAATGGCGA GTGCAGCTAC AATTGAGACG GAGAAATACT 
CCTTATTAGA AGATTTTAAT GTTGATGTTG AAGTAGACGA TGAA

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 29544843 [Map]; Strand: c
  - AT1G78540.2 - [+] show detail - SH2 domain protein B
    Distance: -66; Region: promoter
  - AT1G78540.1 - [+] show detail - SH2 domain protein B
    Distance: -78; Region: promoter
Flanking Genome Sequence: 53-2550-1 - 3-prime edge
```
GGTGGTTTAC TGAGTTGTGT TTTGTGGGGA GAGAGGAGTG CTATAATCTG 
CTGCTTCGCG TCCATAGAAA AGCCCAATAG TCAGCCAATC CCTACACCTC 
TTTTTGTTCA TCTCACCTCG A
```

AT1G78540.1

Model type: Protein coding
Short Description: SH2 domain protein B
Curator Summary: Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description: SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1); Has 144 Blast hits to 142 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78540.2

Model type: Protein coding
Short Description: SH2 domain protein B
Curator Summary: Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description: SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1).
Link: InterPro Scan - TAIR