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53-2819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19838242 [Map]; Strand: w
      • AT5G48930.1 - [+] show detail - hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
        Distance: -80; Region: promoter
    Flanking Genome Sequence: 53-2819-1 - 5-prime edge 
    GTAGATATAA GTGGGTGTGA ACAAAAAAGG AAAGGTCGTA ATCCTTCACC 
    TACCGCCCCA CGACCCCGCC TACTCCATCT GTCGACCAAC TCTCTCAGAA 
    GGTTTATCAT TGGTCCATCT CATCACTCGG TCCTACTTTT CTATCCGGGG 
    TTGGTAAACC CGTTCCCTCT GTCCTAAGGC CCAAATAATA CTAATGGGCT 
    TAAATAGTAT AAAGTTCGAA TGAAGAAGAA GGAAAAAAAA TTGACAAGTT 
    GATTGTTATA GCTACCGTAC AAGTTAGTCA ATCGAATGCC AAAGTTTGGC 
    TTAACTTAAC TCATTACCAC GTAGCAGAGC ATAACAACAA CCACCAATAA 
    CATCTAACGG CGTAAACTCA CGTGTTAAGA GAATTACGTC AGAATCCAAG 
    AAAGTCTTTT TTTCAGTACA CCACAAATAA ATTATGTTGA ATTTATATCC 
    GAACTATACT ATATTATATG AAAACATACC TCAATTAGTC ATAAATTTCA 
    CATTTCATTT TAATTTATTA ACTAATGGTT GTTGTTGCGG ATAGCTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19838126 [Map]; Strand: w
      • AT5G48930.1 - [+] show detail - hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2819-1 - 3-prime edge 
    ATATCTACCC CTCCTCGCTT CTCACACAAT TTCTCAGATC AAACTCAAAA 
    CAAAATTTGT TTGTTCGTTT GATCTTTCTT AAAAATATGA AAATTAACAT 
    CAGAGATTCC ACCATGGTCC GGCCTGCCAC CGAGACACCA ATCACTAATC 
    TTTGGAACTC CAACGTCGAC CTTGTCATCC CCAGATTCCA TACCCCTAGT 
    GTCTACTTCT ACAGACCCAC CGGCGCTTCC AATTTCTTTG ACCCTCAGGT 
    CATGAAGGAA GCTCTTTCCA AAGCCCTTGT CCCTTTTTAC CCTATGGCTG 
    GTCGCTTGAA GAGAGACGAT GATGGTCGTA TTGAGATCGA TTGTAACGGT 
    GCTGGTGTTC TCTTCGTTGT GGCTGATACT CCTTCTGTTA TCGATGATTT 
    TGGTGATTTT GCTCCTACCC TTAATCTCCG TCAGCTTATT CCCGAAGTTG 
    ATCACTCCGC TGGCATTCAC TCTTTCCCGC TTCTCGTTTT GCAGGTCAGC 
    TTAATTTAAA GTCTTTCCCT TTTTTAATTT ATTGAATGCT TGTGTTGTTC 
    TGTTTTTTAG TTCTGTAATG AT

AT5G48930.1

Model type
Protein coding
Short Description
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Curator Summary
At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.
Computational Description
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR