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53-2893-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5839974 [Map]; Strand: c
      • AT4G09160.1 - [+] show detail - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2893-1 - 5-prime edge 
    CTCCGGCGTC ACTTCATGTG TCTGCTCTGA ATCCTCCGCC GCGTGGTTGA 
    GACCTTCTGA CTCCAAAGTC ATCGTCTCCG GCGTCACCTT CTCTAAAACA 
    ACCTCCGCCG TATGATTTGA CTCCTCTAGC TCCGGCATCA AAGGTAGCTT 
    CAGATTTGTC TCCGAAGTCA CCGGTGCCTC TTCTTCCGAT GTTACATGCT 
    TTGGCTCATC TTCTTCACCG GAAGGCATTG AAACGTCGGA GGTTAAAGGT 
    GGCGGCGGAG TAGTAGTTGC AGAATCTTGA GACATTTTTT TATTGTTCTT 
    GAAAAAAGAA GAAGAAAGGG ACAGAGAGAG ATTAACGGGT TATTCAGGTA 
    GAGAGGAATG GTCAAAGAAG AGGAATCCAA TGTTGGGCTC TAAATTTACA 
    ACTCAAAAAG CTGTCCTAAT AAAGTAAAAG ATGTCCTTTT CCTTTTTAAA 
    GTTGTAACCA GTAGTACTTT ATTAAATTAT TATGCTACTA AGTTGTAAGT 
    TGTAACTACC AAAGTAATGA TCTATGTTCG TGCATATATT TTTGGGTTTA 
    GCTAATGGTC TTTCAGAACA TTTCCAGGTT GAATTGTTAG TACGTTTATT 
    TGTAAACAAA AGAAATGTGA AGATTTTGGT GAGTACAAGA ATGCTTCTCG 
    AATATTGNTT TAGCACTCAA TTTAGCAAGT TAGAGAAGAC CAAGGGTTAT 
    NAAATGTAAA AGACGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5840090 [Map]; Strand: c
      • AT4G09160.1 - [+] show detail - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2893-1 - 3-prime edge 
    CGCCGGAGAC AGAGACTGCG AAGCTAGAGG TTCTCAACCA CACGGCGGAG 
    GATTCAGAGC AGACACATGA AGTGACGCCG GAGAAAGAGA CTGTGAAATC 
    AGAGTTTCTC AACCACGTGG CGGAGGATTC AGAGCAGACA CATGAAGTGA 
    CGCCGGAGAC AGAGACTGTG AAGTCAGAGG TTCTCAACCA TGCGGCGGAG 
    GATTCAGAGC AGCCACGTGG AGTGACACCG ACGCCGGAGA CAGAAACATC 
    GGAGGCAGAC ACGTCATTGC TTGTAACTTC CGAGACAGAA GAGCCTAACC 
    ATGCGGCGGA GGATTATTCA GAGACAGAGC CATCACAGAA ACTAATGTTG 
    GAGCAGAGGA GAAAGTACAT GGAAGTAGAA GATTGGACAG AGCCAGAACT 
    ACCAGATGAA GCGGTGTTAG AAGCTGCAGC GTCAGTCCCT GAGCCAAAGC 
    AACCAGAGCC TCAGACACCA CCACCACCAC CATCTACTAC TACTTCCACT 
    GTTGCATCTA GATCTTTAGC CGAAATGATG AACAGAGAAG AAGCAGAAGC 
    AGAAGAGAAA CAAAAGATTC AGATTCC

AT4G09160.1

Model type
Protein coding
Short Description
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Computational Description
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G72160.1); Has 12185 Blast hits to 8606 proteins in 820 species: Archae - 53; Bacteria - 1604; Metazoa - 4851; Fungi - 2300; Plants - 1007; Viruses - 130; Other Eukaryotes - 2240 (source: NCBI BLink).
Link
InterPro Scan - TAIR