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53-2901-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12845490 [Map]; Strand: c
      • AT1G35115.1 - [+] show detail - transposable element gene
        Distance: 35; Region: intergenic
      • AT1G35120.1 - [+] show detail - transposable element gene
        Distance: 607; Region: intergenic
    Flanking Genome Sequence: 53-2901-1 - 5-prime edge 
    TGCGAAGACA CGACTCTTAA TGAAAAGACA CAACTTATAA CTCATGACTC 
    TTAACTTAAT AACTAACTTA TACGAATGTG ACTTTGCCTT ATAAGAGATT 
    TGATTGTACT TCAACATCAT ATACAAATGT CTTCTTCTAN GTCGACG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6929210 [Map]; Strand: c
      • AT5G20490.1 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: intron29 (CDS)
      • AT5G20490.2 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: intron29 (CDS)
    Flanking Genome Sequence: 53-2901-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGNCCG TTACCGACCG TTTTCATCCC 
    ACAGTGTTTC GTTTCATATA AGTACAGATC GAGTCTTGTT CCCGTAACAC 
    AACAATCGAG TCTTCTAATA CAATCAAGTC AATAAGATTG ATTACATTCA 
    TACTCTGCTT TTCTTTCATA CTCTGTTCTT CACACAAAAT ATTAACATAT 
    GACACATTCA GGAAAAGGCT TGTCTCCTTT GTATATAAGA TTTTGTGAAA 
    TAGAGTTGAC TAGTAAATCC TGGTTTTCCT GCATGACACG AAGTTTATAA 
    CATGTGTTAA GAGAAAAGCA GAGTGCAATA ATGCAAGAAA TGGGGTCCCA 
    TCATTACAAT TAGTACAAGG AATTCATATA TNTGATACCT GTTGCTTTTC 
    ATTCAGATGT TTCTGTACAT CAAAAGTCAT GTCCTGTGAA ATTTATAGAC 
    GATAAGCAAT TGAAGAAACA ACAACGTATC CAAGTCTACT TTGGAACGTG 
    CAATTTAATC NGAGNANGCA CTTCCCCTTA CCGGGGTAGG NTTTNNAACC 
    TCCANTANGA TAATTTCCNT TNGGGTGGAG GNNTNTGAAC ATTGAATNNN 
    NNNNNGAANN CGGGGNGGNT NNCNNNCCCG CCATCTTGAA AANNTTNTTT 
    NCNTCTGNGN GGGNNNNCNN NGNATGGGGN NGGGGNGGGA AANNCCTTGT 
    TTTNATNGNG GNGGCCNNNG NNNTTNNNNN NANCNANNNN NNNNTNCNCG 
    GGGGGGGNNC CNCCCNANNN NGGGGGNGGN A

AT1G35115.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.1e-168 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G35120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G20490.1

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20490.2

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 39115 Blast hits to 25959 proteins in 2421 species: Archae - 443; Bacteria - 5231; Metazoa - 20936; Fungi - 2937; Plants - 2132; Viruses - 125; Other Eukaryotes - 7311 (source: NCBI BLink).
Link
InterPro Scan - TAIR