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53-3303-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2982688 [Map]; Strand: c
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3303-1 - 5-prime edge 
    CTNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCAAGTCA TATCCANATT TATCTGGTAA CTGATTAATC CAACCAACAA 
    TTTCTTCTTG AATCACTCGC AGTGTGTTCC TCCCACGGCC CAATCTCCAT 
    CTTCCCAAAG TGAGGCCTTA GCTTCTCCAC AAACTCTCTC AACAGTGGTC 
    TCATCTCTTT CTCCTTCATC ACTCTCAACG CACACTGTAC CACAAAGTTG 
    CCAAACTTAT CAGTTGTCAT TCTTACCCAT TCTTTGGCAT TCCCTCTAAA 
    CTCCTCCAAC ACTTGGTCTC TCGCAAAATC CGATTTTAAA CACTTCTCCA 
    CCACATAGCT TCCTTGTCTC TCCATCGCTA ACCTGAAGAA ACTTCCACGA 
    AGTCTCTCAG CGATTGCGGT TGTTGCAACC GGATTCTGAA GTATCAGAAT 
    GTTCTGCACA ACGTGTGTTC CATAGGGGTC AAAAGATAAC CAATCTGCGT 
    TGTTTGCGAC GCACTCAAAG ATTAGGTCTC TGTATATGCC TCTGATTTCC 
    TGAAGCACAT TGTTTAGGGC AAGGCATCCA GTTTCTAGCC TGGCAAGGTG 
    CAGAGTGTAT TCGTAAGTGA GCTTGTAGAG AGACTCCTTC TTGGTTTTAT 
    CGACGGCTCG TATAGCGGGG ATGATCAAGC CACGACCATA CTTATCGCTC 
    ATGAGCAAGA AGAAGTTTGT GTCGACGGCG CAGAATAAGA GATGGTCTAA 
    GCTAGGGCTG CGTCTAAA

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR