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53-3388-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16545709 [Map]; Strand: w
      • AT2G39700.1 - [+] show detail - expansin A4
        Distance: -125; Region: promoter
    Flanking Genome Sequence: 53-3388-1 - 5-prime edge 
    GTTAGAGTGA GAGAGAGATC GAGAGATAAT TGGCTAAATT TTAATTTCCT 
    TTTGTCAAAG TTAAAACTTT TAAAATAAGA TTACTATTTC TACGTAAGGT 
    GGAGGTAGGT TTGTAACCGT TTTGTCATTT TTTTAATGTA ATCTAATTTT 
    CTTAGATGAT ATAATGATAC TTACAAATAT ATTATCTCGT TGAATCCTGG 
    ATTTTAAAAT TGGTAAGACT TGGAAATTTT GATGCTAAAA AAAGTTCGAC 
    AAAGAATATC GAGTTGACCT TATTTGAGGC GTTTCATACT TATGAAGAGA 
    GGTTATCTTA CTTTATATTT TATTTTATAC AAATGTATGT TTGTTTTGCT 
    GACCAAATAA AATGTAAACA TTTATAAGCC TTTAATATGT CTTTTGACTC 
    TGCTCGTTTT TCACTTTTTT TTTAACTTGC NCGCGTAGTC TAGTTCAAAG 
    GNGAATTGTC TTATGCAAAT TCCATGAATC TACGTACAGA TTNTNTNTTC 
    TTTTGAAAAA AGTAAATATT TTCTAAAGCA ATCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16545591 [Map]; Strand: w
      • AT2G39700.1 - [+] show detail - expansin A4
        Distance: -7; Region: promoter
    Flanking Genome Sequence: 53-3388-1 - 3-prime edge 
    ACTCTAACTT TGGAGTTTCC TTCCCTCCAT AAATACCGAA CCTCACTCCT 
    TCTTCCTCCA CCATCCTCAT CTCTCAATCA ACAAACCTAA CTCTTTCTCT 
    ATACAAGAGC GCAAGCTCGA AGGCGCTCTT GTTCTTTCTT CATTTTCTCC 
    TTAACAATCA CCCTCATAGT AACTTTAAAA CTCTCTGTTT CTAGTAATTC 
    ACACACAAAA TGGCTATTAA ACTAGCAATT CTATTTACCA CATTTGTTCT 
    TTTTAGCCTC GCCGACGCTA GAATCCCCGG TATTTACTCC GGCGGCGCAT 
    GGCAAAACGC ACACGCCACT TTTTACGGTG GCAGCGACGC CTCCGGCACA 
    ATGGGTTAGT CCCATAAAAA CAGAGCATAA ATATAATTTT TTAGTATAAA 
    GTTTTCTATT AAAAGTCATT TTTAACAAAA TGAGTTTAAT TCATTACAGG 
    AGGAGCTTGT GGTTACGGTA ACCTATACAG CCAAGGGTAC GGGACCAACA 
    CGGCTGCTTT GAGTACGGCG CTGTTTAACA ATGGTATGAG TTGTGGAGCC 
    TGCTTTGAGC TAAAATGCGC CAACGACCCT CAATGGTGTC ACTCANGTAG 
    TCCTTCGATC CTCATCACCG CAACCAATTT CTGNCCANCC AAACTTGGCT 
    CAGCCTAGCG ACAACGGAGG ATGGTGCAAC CCACCACGTG AACACTTTG

AT2G39700.1

Model type
Protein coding
Short Description
expansin A4
Curator Summary
putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A4 (EXPA4); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2158 Blast hits to 2155 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 41; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR