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53-3400-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5187971 [Map]; Strand: w
      • AT1G15060.1 - [+] show detail - Uncharacterised conserved protein UCP031088, alpha/beta hydrolase
        Distance: -997; Region: promoter
      • AT1G15080.1 - [+] show detail - lipid phosphate phosphatase 2
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-3400-1 - 5-prime edge 
    CTTGTTTGTG GCCATTGTGC ATCTGGAATT GTTATAGGCC AAGCTTGTAA 
    CTTGAAAAGC TCTTTTTGAG CTCGACCAAG TTCCCTTTGT TTTCTAATTT 
    GGCAGCTTTC AGCAAAAACC CCAGTTTTGA ACNTTTATTT TCGTCCATTA 
    ACAGCTTCTC TTGTGAAATT CTAGATTAAT CATGCCTGAA ATTCATTTGG 
    GTGCTCATAC AATAAGATCC CATGGAGTAA CAGTCGCGAG GTTCCACATG 
    CATGACTGGC TCATTCTTCT GCTGCTAATA GTCATTGAAA TTGTTCTTAA 
    TGTCATCGAA CCCTTTCATC GTTTTGTTGG AGAAGATATG CTCACTGATC 
    TCAGATACCC TCTGCAGGAC AACACAATTC CTTTCTGGGC TGTCCCGGTA 
    ATACATTTTG GATTTTCCTG ATTTCTTTTA TGCAACATGT AAATCTTGGA 
    CGTGGTCTTT ACAAGTGTTT TTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5187855 [Map]; Strand: w
      • AT1G15060.1 - [+] show detail - Uncharacterised conserved protein UCP031088, alpha/beta hydrolase
        Distance: -881; Region: promoter
      • AT1G15080.1 - [+] show detail - lipid phosphate phosphatase 2
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-3400-1 - 3-prime edge 
    CAAACAAGAA TCACTAAATT CCACTATAAC CTGTGTCTCA ACACTCATCA 
    GTGATCAATA GGAGAGAAGA CGATGAGAGT GTACCTTTAC CGTTAAAGAT 
    ATGGAGATGA TGAGCTGAAG TCCGACGTCG GAAACGCTCG TGAAAGCNGT 
    CTCTACACTC TATGTGTCGC GCNGAATTGG GGCACCTGTA TTAAAGCGGG 
    AAACGGAAAT CCTCTATAGT TTTTCTCCGG GAGATTTCAA AGGAAGGAAA 
    GATAAAGTTT TTTGTTCGTC CAATAAAGAA AAAGCAACCT CCTCTCTCTT 
    TAGCTTTATG TTCATCTCAC TTCGA

AT1G15060.1

Model type
Protein coding
Short Description
Uncharacterised conserved protein UCP031088, alpha/beta hydrolase
Computational Description
Uncharacterised conserved protein UCP031088, alpha/beta hydrolase; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 (InterPro:IPR016969), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (TAIR:AT1G73750.1); Has 177 Blast hits to 156 proteins in 44 species: Archae - 2; Bacteria - 72; Metazoa - 2; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15080.1

Model type
Protein coding
Short Description
lipid phosphate phosphatase 2
Curator Summary
Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.
Computational Description
lipid phosphate phosphatase 2 (LPP2); FUNCTIONS IN: acid phosphatase activity, phosphatidate phosphatase activity; INVOLVED IN: abscisic acid mediated signaling pathway; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.5); Has 2086 Blast hits to 2081 proteins in 377 species: Archae - 13; Bacteria - 320; Metazoa - 928; Fungi - 399; Plants - 199; Viruses - 3; Other Eukaryotes - 224 (source: NCBI BLink).
Link
InterPro Scan - TAIR