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53-3479-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13165031 [Map]; Strand: w
      • AT4G25910.1 - [+] show detail - NFU domain protein 3
        Distance: 0; Region: exon4 (CDS)
      • AT4G25920.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -444; Region: promoter
    Flanking Genome Sequence: 53-3479-1 - 5-prime edge 
    GTTGAGATTG ATGGTTACGT GGTCAAGGTT CGACTCACTG GACCAGCTGC 
    TGGAGTCATG ACTGTTCATN TAACCTCGAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13164915 [Map]; Strand: w
      • AT4G25910.1 - [+] show detail - NFU domain protein 3
        Distance: 0; Region: exon4 (CDS)
      • AT4G25920.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -560; Region: promoter
    Flanking Genome Sequence: 53-3479-1 - 3-prime edge 
    ATCTCAACTA ACTCAAGCCC CCCACCTCCA GTACCGGATA GGTACGGCCT 
    TAACTCAGAG AGAACCTAAA TTGACAACAA ACCAAAAAAG GACCATTCAG 
    ATCAATTTCA AAACCAAGGG GCTAATAAAC CAAAAATAAC TAAACCTTTA 
    AAAAACCAAA CCTTCTCAAT GTTCTCATCG TTCAGCTCTA AACCTCCTGT 
    CTCGGATTCA AGAAACTGCT CAACGGACAT GATCTCTGGA ATCTTGTCTC 
    GAAGACGACT CTCGATTCCC ATCTTCAACG TCATTGATGA GCTAGGACAC 
    GAACCACAAG CTCCTTGTAG CTTTAAAACC ACCACAAGTC CGTCGATTTC 
    GTGCAACGCC ACGTTTCCTC CGTCGGCCAT TAGAGATGGT CGTACTTCGT 
    CTAACACTCT CTCCACATTC TCTTCCGTTA ACGGCATGAC GCAGCTCACG 
    TGACCAAATA CTAAACCAAA CATAACAAGA ATCTAAATCA CAACTAAAGT 
    TCTAAAGAGA TTGGTCTGGT TTGCAAATCA AGTACCTGTT CGTTTTCTCA 
    AAGGTCGAGT GTGTTGTAGC CAAGAAAAAT GTATTCTTTG AAATTGACCC 
    CTGANGAATG TACTGCATTT GGAAGAGACC CCTAAAGTAT CTGAAATTGC 
    GTTCTAAACA CAAGCGAAAG AGGAGAAGAA GAAATCAAGC AAAAGGAGTC 
    ATTTTTTTGG TGAAGCTCGA CGAAG

AT4G25910.1

Model type
Protein coding
Short Description
NFU domain protein 3
Curator Summary
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.
Computational Description
NFU domain protein 3 (NFU3); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25920.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT4G14260.1); Has 254 Blast hits to 242 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR