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53-3906-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24061648 [Map]; Strand: c
      • AT5G59710.1 - [+] show detail - VIRE2 interacting protein 2
        Distance: 0; Region: intron12 (CDS)
      • AT5G59720.1 - [+] show detail - heat shock protein 18.2
        Distance: -929; Region: promoter
    Flanking Genome Sequence: 53-3906-1 - 5-prime edge 
    TGTCTATCCA TGAGCTCGTA CTTGNTAACA GAATGNTNGC TGCTNAGTAA 
    CCATCANCCG CACACCTGGA CTNATAACAN CTGCATACCC TANAACAAGG 
    AAATAGATAT TCCTGCAATA ATCGTCGGCT TACCTTTCTC ACTGTTTTGA 
    ACGAATTTGG ATCAAGGTAT TCGTATGTTC CTCTTTCATA TGTAGCTGCC 
    CTGACTAAAG GTTCCCCGAC TCTGAAGAAC CATACTCTGA GTTCCTTGTG 
    GTAAAACCAA CCTCTTTCGT AACTGCAACA TGTCAATCGA ACTCAAAAGT 
    CTCAGCCAAA GAGAGCGGAG TAAACGAATA GATCAAAGAT TACAGTAGAG 
    AAAAAACATA CAGTTCATCT GCTGCGTACA GCTGTGCTTC ATCTTTTGGC 
    ATACTGGAAC AATAATTAGA GCAAAGTAAT AAGTTTAAAA GCACAAGGTT 
    AATTTAGGAG TTGGGCAAAT GTGACGCTGA ATGCTGATCT AATAACAGAC 
    CTGTAAAATG TGTAGAACAA TAACTCGTAG GAGAACCTTT TGAAACTAGC 
    TCGCTGCAAC AAACGGAAAT AATGACACAT TTGTTAACAA AATCGAGAAA 
    ATACTTTGTT GGTACTACTC GCAACAACAG AGGGAACTTA CAGTTAGAGG 
    CGGAGGTTCT GTGGCGTAGT AACAATTTGG TACTGTGAAC TCGACCTCGC 
    TCTTTGCCGG TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24061759 [Map]; Strand: c
      • AT5G59710.1 - [+] show detail - VIRE2 interacting protein 2
        Distance: 0; Region: exon13 (3UTR)
      • AT5G59720.1 - [+] show detail - heat shock protein 18.2
        Distance: -818; Region: promoter
    Flanking Genome Sequence: 53-3906-1 - 3-prime edge 
    GAAAAGAGAC CAAGCTTGCT GCAGCTTTGA CGACAAGTAG GTTTGTTCAA 
    TTAGTAGCAT CTTTACAATG TAAAGCTTTT CTCTTCATTT CTCTTTCTTT 
    CTTTCTTTCA TGCAAGTTCT ATTGATTAGA AACCAAAACC ATGACATATC 
    ACATTTTCAA TTTTTAACCC CAAGTTTCCC AAAAAGGTAA TCACAATTAC 
    TTTCCATGGT CATTTCTTCT GGTTCAAGCA TGACATGAAC AGGCAATAAA 
    TAAGTTGAGA TTTTGATCAC AGTAACTGAT ACTTGAATCG AATCATTTAG 
    ATTTTTTTTT TTTTAANNTA NCTNGNTNAA AAAANANGNN GGANNTNTTG 
    GAAANAAAAN CNGGGNCAAA TNTTNNTTTN TNNGGGNANA AAAAAGCCCT 
    TTAAAAAANN GGNNNCTTTN NNNNAAATTN NNGGCCNCCT NTTTTGGGGA 
    AAANTNNTTT TNTTTNCCNT TNGGNNNAAN GNAAAAAACT TNAAATGGGG 
    TNTTTNCCCN TTTTNNNNAN GGGNTNAAAN ACNTTAANTC CCCCTNCCCC 
    CCNNAANAAA AGGGGGGNNN ACNAAAAAAA ANNCNTTTNC GGGNACCNTT 
    TTTTTNNNAN TTTTTTCCCC CCNAANNNNN NNNGGNNNNT NNNNAAGGNG 
    NNNCCNNNGG GGGNNTNNNG NNNNNGANAA AAAAAAAANN NTNTTNNNNG 
    GNCNAAAAAA AANGNNNTTT TCTTTNNNCC TC

AT5G59710.1

Model type
Protein coding
Short Description
VIRE2 interacting protein 2
Curator Summary
Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.
Computational Description
VIRE2 interacting protein 2 (VIP2); CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 3791 Blast hits to 3038 proteins in 463 species: Archae - 1; Bacteria - 1471; Metazoa - 837; Fungi - 516; Plants - 178; Viruses - 9; Other Eukaryotes - 779 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59720.1

Model type
Protein coding
Short Description
heat shock protein 18.2
Curator Summary
encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.
Computational Description
heat shock protein 18.2 (HSP18.2); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR