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Mutant Lines
53-3999-1

53-3999-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 9472394 [Map]; Strand: c
- AT4G16830.1 - [+] show detail - Hyaluronan / mRNA binding family
  Distance: 0; Region: exon7 (3UTR)
- AT4G16830.3 - [+] show detail - Hyaluronan / mRNA binding family
  Distance: 0; Region: exon7 (3UTR)
- AT4G16830.2 - [+] show detail - Hyaluronan / mRNA binding family
  Distance: 0; Region: exon8 (3UTR)
- AT4G16835.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: -369; Region: promoter

GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCAT CTGACAACGA GAGACCAGTA AACAGTAAAT 
CCTCGCACAA AATCCTAAAG GAGGATGCAC GAGTATGGAC GTTATCATGG 
ATGGATCTTA CTTGCCCCCA AGAGATGGGA ACTTGAGCAG CATCTCCAAT 
AGCTGGTGCA GCTTCATTAC GGTAACCACC AGATTCGCCA CTAGAAACAC 
CTCCACGGCC ACGACCACCA CGTCCACGGC CACCACGACC TCCTCGGTAG 
TAGTTCCCAC CCTCTGCTGG CTTCAGAAAC TCATTGATGC TCACAGCCTG 
TTTACAATCA GGAAACACAT CAATAAGCAA ACTTATTGAT TTCTACAATA 
TGTTTCAATT CAGACAATGA TTTAAACCTT CTTAGCCTTC TCTTCTTTGT 
CATCTTTGCG TTTGTCCTTA TCAGAACCCT GGGAAATAGG TTTAAGGAAA 
AGGTTTAGAA TCATTGACGC AAGTTAATAG ACGACAATGA AGAAATGATA 
ACATGATATG TCTTACCAGC TTGATGAAGA TTTCATCATT AGACTTCTTG 
TTTGACAGTT GTTGCATTGA TTCAAACACT TTCGTATCAA CTTTCCTCTC 
AGAGGTGGTT AATGATTGAA GTGCCTTTTT CTTCTCCTCG AGTATTTTCT 
CATACTCATC AAGAGTCATT TCCTGTAGAA ACACAAGTCA ATAAACAATA 
AGTGAAAATT AAAAAAAAAC TGATACCAGT ATAGTAN

AT4G16830.1

Model type: Protein coding
Short Description: Hyaluronan / mRNA binding family
Computational Description: Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16830.2

Model type: Protein coding
Short Description: Hyaluronan / mRNA binding family
Computational Description: Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1174 Blast hits to 1093 proteins in 244 species: Archae - 2; Bacteria - 52; Metazoa - 515; Fungi - 125; Plants - 182; Viruses - 23; Other Eukaryotes - 275 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16830.3

Model type: Protein coding
Short Description: Hyaluronan / mRNA binding family
Computational Description: Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 21958 Blast hits to 10880 proteins in 1019 species: Archae - 12; Bacteria - 7276; Metazoa - 6848; Fungi - 1552; Plants - 2999; Viruses - 314; Other Eukaryotes - 2957 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16835.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR