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53-4198-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6937178 [Map]; Strand: c
      • AT5G20490.1 - [+] show detail - Myosin family protein with Dil domain
        Distance: -353; Region: promoter
      • AT5G20490.2 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-4198-1 - 5-prime edge 
    GTTAGTAGAG ATATCTTTGT ATGAGGTTTG CAGTTTTGTT TTCGATCCCT 
    AGTTCGTCTT CCCATTAACA CGAGAGATTC TCAATCCAAC TATAGTAGAA 
    AAGTTGAATT TTGTTATTTT GGGGAACATT ATACAGTGTT ATTGAAAGGT 
    AAGGGTCAAG AGTTCTATAA CAAGTTGAAG TTGGACCATT TCAGTTATCT 
    TAAATTTCAT TTCGTGGACT TATCATTTCC TATTAACATT TCACTTAGCG 
    GCTCTCACCA TTTTGGATTA CTTCTATTAT TAGTAACGAG GTTATGTAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6937231 [Map]; Strand: c
      • AT5G20490.1 - [+] show detail - Myosin family protein with Dil domain
        Distance: -406; Region: promoter
      • AT5G20490.2 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-4198-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCNTNCTAAN NACNACCTNN TCTGGACAAG TGTTTAATCT GAGGNNTGAT 
    TAGATTGGAT TATATACAGN NTGNNCCCAT NATGAAGAAN GATACAACCA 
    GCCCGGTGAC ANAAAACCAC GCAGGGNTGA TAGATATCTA TGATTTTACC 
    ATGGCTACTC CTTTTTTCCA ATAGATCCTC TCTTTATCCC AGTTAACTCA 
    TCCAAGAGAG ACCGAGTTTG CAGAAAGCCG ACTCAGCGAG TCAGGCAACA 
    AGACGAGTCA GATCGGGCAG ATTCTCTCGA GTTGGTGTGT CTGAGAAAAA 
    TTCTCCTTGA AGTCAGCTCA AAGCAGACAC GGAGAAATCG GGAGATCGGA 
    ATTAACGGAG CCAAAATTCT TTTCAAAAAG CTGAATCTGA ATGAATTTTT 
    TAATCTCTCT CAAGAAAGCT GATTGATTGT TGAAGAAGCA GAATGAAAGA 
    AAGCTAGACT TGGCCTTCTT CTTTCTTTGC AGACGACGTT CTCTAATGGC 
    TTTTTTTTTG GTTTTNCTCT TTCCTNNAAC AACAACAATG GTCNCTTTTG 
    ACCNGGGGGG CTTTTTTTTT TTTAACCCTT TTTTTTTTTA AANTTNATAT 
    TGGGGGNTNG GGNNNNAAAA AAAAAAAAAG NGGGGGGCCT NNAAAANNNN 
    AAAANGGNNN NANGGGGGGG CCCNNANGGG NAAAGGGGGG GGGGGGGNG

AT5G20490.1

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20490.2

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 39115 Blast hits to 25959 proteins in 2421 species: Archae - 443; Bacteria - 5231; Metazoa - 20936; Fungi - 2937; Plants - 2132; Viruses - 125; Other Eukaryotes - 7311 (source: NCBI BLink).
Link
InterPro Scan - TAIR