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53-4214-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25498417 [Map]; Strand: w
      • AT5G63700.1 - [+] show detail - zinc ion binding;DNA binding
        Distance: -785; Region: promoter
      • AT5G63710.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -997; Region: promoter
    Flanking Genome Sequence: 53-4214-1 - 3-prime edge 
    CGAATATATA CGGAATAATG ATATCAATAC TAATATGCTT GATTAGTTGG 
    ACATGTTCTT ATGCTCATCC CTTTATATGT TGTCATACGA TTCTTCACCT 
    TATTGAGACT TTTGTTCGAT CTGCAAAAAG ATCTGATGAT CATATCTCAA 
    TCTAGAACGT ATATTTCAAA AGTTAAATTT CATCAACATT CACAAATAAA 
    ACAAACTCAA ATTTATTTTC TATTTTTATC AGGAAAAAAT GAACTTAGGT 
    AAGTGAGAAA AAAGCCTTCA GAGCAAAAAA AAGAAAGAAA GATAAATTTG 
    AACATTGTGA AACCAAATGC CAGATTACTT TTCTTACTTA TTAAAATCTT 
    ATAACTTGTA AATGATTTGT TCATAAAAAT GTTATAATTA GTAAATTAAT 
    TTTAACAACA AATATCACTT ATAATCCAAA ATTTAGGTAA AGACAAAACT 
    TGGTTCGATA TCTTTTGTAC TTGCGAGCAT TGTACTTCCC GGTCACAAAA 
    CGCAATCGCT AAGTAAAAAA AAAAGGTCCA TNTGAACNCA ANACTTATTC 
    AATTTACNAA ATAACCCCTA TGAAACTGTG TTTAATGGAC CCCGTGTCCT 
    GGATACNATA GGGGTATAAT ANANACTTTA GGAAAGTAAA GGGTTGGCGT 
    TTGGGTGATT GGTCAAAGCN AATCCTTAAN AATCTAGNAT ACTGGCNCAG 
    GTNACTCAAC AGCTTTTATT TGGCTATTTT N

AT5G63700.1

Model type
Protein coding
Short Description
zinc ion binding;DNA binding
Computational Description
zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Plus-3 (InterPro:IPR004343), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 1143 Blast hits to 955 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 778; Fungi - 27; Plants - 204; Viruses - 3; Other Eukaryotes - 129 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63710.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G10290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR