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53-4399-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23000318 [Map]; Strand: w
      • AT3G62110.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -277; Region: promoter
    Flanking Genome Sequence: 53-4399-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCGTAACGTA GTGAGAGTTG ACTGACTCTG 
    CTAATTATAC GTTTTCATAA TTTCAGTGTA AAAAAAGATA AAATGGACAC 
    CAGAAAAAGA GCTAGAATTG GTGAAGGGAT TTTTTGAAAT TATATTCCGA 
    AATTAGAGAG AAGAATTAAT AAGACAGGCA TAGTAATGAG ACAGACTTGT 
    TGTTGTCTAT AAATAAAACA ATACAACATC CATAATTACT ATACTTAATT 
    ACCCCCCCTT TAATTATTCA GCNAACATAC CACCATCATG GACCGGATTA 
    TCTGGTCAAA ATACCCTATA TAAACAATTA TTTCAAATAT TCACTATTGA 
    CTAAGACAAA TCAATTTTTT TCTGTAAAAA CAGAGCTTAA TGGTGAGATC 
    CATAGATTAA ATACTATTGA ATATCATCAG TTAATCTATC AATCAATAGT 
    CAATAGATCA AATCTACGCC TGAAAACANA CCCAAACCGA AAACGAGTCT 
    AAACCAAAGT AAACAAGAGA AACACAAGAA GAAGCAATTT TCATCAACTT 
    TGTAACTCCT GCAGTCCTGC CCCCAATAAG TCCACTTTCT TTGCAGGCTT 
    CCCTGAATGC AACAAAACAT AATGTGATTA ATTAATCTTA ACAACGACAT 
    TTGGGATATG ATTATGGGGT TCTCTTCCGT TAACAAATAG TAAACCAGGC 
    CACTTTCCGG TTTACGTAAT ATTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23000324 [Map]; Strand: w
      • AT3G62110.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -283; Region: promoter
    Flanking Genome Sequence: 53-4399-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CAGTTTACGA CTTACGAGAC CAAACGCCAC GTGTCACGTG ATCCGTTATC 
    TTCTTCCAAC TAAACGACAG CGTTTCGTCT CATTAGTAAA AAAAAAANAA 
    TTACAGAGCC TTTTCAAAAA ACCCTTTTTT GCTTCAATAG AATCAATCAA 
    TCTTCGATGT AANAANAATT TGAAGGTCAC AATTTTCTCT TTATCCTTTT 
    TATAATAATA TTCTTTTAGT TCGGATCACA TGAAATACNC TGATTCCTTC 
    CCAACAAAAG AAACAATTAA TTTATAAGNG TNGTTCATAT TAATNCANAC 
    NGGGTTTCTC TTTCTCTCTG GGTTTCTCTC AGNGACCCTC TTTGTCTNTT 
    TGTAACANAA CATCAAATAA GGTNTNTCCA GACATCTTAN ATNTCATCNA 
    ATCGAANGTT CTTCTTCTTC TTCTTCTTCT TCTTTAATTA TGGTTNAAAG 
    TCTCTAATTA TATCTNGGTT TNCGTAGGAG GAANATNTTA AAAAATTGGT 
    AATGGCGATG ATCATGGGTN CGGANAAGGT ANAAAATGGA CCTNCTGCTT 
    GAATTTTGGC GGGCAAAAAC GGNCTCTTTC AATGATTTTT ATGTCCATTG 
    GGGGTNCCCC AGTTTCCTCT CACCACTGAC CCATCTAATC AATNTTTGCA 
    ACTTGCTACT ACTATCCATC CATCCATGAG AGANAAATTT TTTGNGATTC 
    AAAGTTTTG

AT3G62110.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR