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54-0673-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11649 [Map]; Strand: c
      • AT1G01030.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 54-0673-1 - 5-prime edge 
    TTTCTTGATG TTCATCATCA TTAGGCTTTT GTCACCATGT TGAAACTCGC 
    ATCTTTTCAA TTTTGTATAT AAACTATATA TATAATTTAC ATAAAATAAC 
    AGGTTCACAT GCCTCAAATG TTAGCTAATT ATATCCATAA TATTCGCTAT 
    AACTCGTTGG TTACTCATCA TCTTCATAAG TTATATGTTA ATCTTAATAC 
    TTGACACTAG GTGAACCTCT GTGCCTACAG CATTTCATCA ATAGAACAGT 
    TTTCATCTTC TTCTTTTTTC AGTTTTGATA TTTATAACTT GAGATTATAA 
    TTGATGAGTG GGAAAAAAGC TTATAAATTT CATGAATTGT ACTCTCTGTG 
    CCTATCTCCC TACACTGACA AAGTGTTTCA TGGTACATTC TAAGCTAATG 
    GGCAGGTCCA AAAAAAGGCA CTCTTTTCTC TCTCTCTGAT GGTCCTATTT 
    TGNTTGTTAG GNTACTCTTG TAATTTTGCT CGGGNAAAGA GATTTTCTGC 
    NGGTTATGGG CANANAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 179441 [Map]; Strand: w
      • AT1G01480.2 - [+] show detail - 1-amino-cyclopropane-1-carboxylate synthase 2
        Distance: 1041; Region: intergenic
      • AT1G01490.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 618; Region: intergenic
    Flanking Genome Sequence: 54-0673-1 - 3-prime edge 
    ATTGTAAATG TCATAGATCA AGTTGTGGCT CAAACCAAAT GCAAATGTCA 
    AAAACATTTT GGTAGGTAGC CACCTAAAAG GAGCATGTGA AAACTTAATT 
    TGGTATTTCA TCATTTTCAA TTTATGCCGT ATTGAATTAT TTAGAGTCAA 
    AACAAAATCC AAGACAGAAA AAAGTTCCCT TGAATATTAA AAAGAGGATT 
    CACTATATAT ATATATAAAA AAACTTGCCC ATGTCATTTT TTCTACCAAA 
    CAAAATAAAT ATATAACTTG ATCATGTTTC GTAACCTACT GTTGATGATC 
    ATGAATTGGN TGTGACTTAT GACTGATGAT GACGACGATA ATGTCNATGA 
    TTATAATTAG ACAGAGATAT CTATATATTA TCCAGATACA TATTATTCTG 
    TGNGAAAAGG ATCAAACCGT TGTTTCCNAG TATCAAATTN GATTTTTGNC 
    TTATATATAT ATATTTNTGN NCCNGTGTGN NNNNTCNNTN TCNNNCTAAN 
    AGGNGGNNCC NNANCCCCCT TNNNNTNGNN NNTNNNTNNN NTNNCNNG

AT1G01030.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
NGATHA3 (NGA3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1); Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01480.2

Model type
Protein coding
Short Description
1-amino-cyclopropane-1-carboxylate synthase 2
Curator Summary
a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.
Computational Description
1-amino-cyclopropane-1-carboxylate synthase 2 (ACS2); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 28365 Blast hits to 28364 proteins in 2923 species: Archae - 821; Bacteria - 19365; Metazoa - 634; Fungi - 793; Plants - 1286; Viruses - 0; Other Eukaryotes - 5466 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01490.2

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR