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54-1617-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29437805 [Map]; Strand: c
      • AT1G78240.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -1234; Region: intergenic
      • AT1G78250.1 - [+] show detail - pre-tRNA
        Distance: 6168; Region: intergenic
    Flanking Genome Sequence: 54-1617-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TGCTATGTCA AATCATCCGT AGAACTATCT 
    TTTTTATTTG ATGAGTACAA ACATATAAAA CAAAATTGCA AATATATCAC 
    CACCCTCTTA CACTTTATAT ATTTAGGTAC ATGCAGATTT ATAAATCCAC 
    TAAATAAAAA TGCATGAGCN TGTGAAACAA AACAACTCAG TGACTCACTC 
    GACTTATATC ATACGGAATA TAAGAAAAAA TCAAATGAAA TTTACCATAA 
    AATACAGATT TTGAAGATCA AATAAAAGTA GAAAATCTTA TCGTGAGTGG 
    GATATTTAAA AGTACAAAAT TTGCCTCGTA TTGACACAAT TTTAACCTTA 
    TCGTGGTTGG CGTGTACAAG TGGGCAACTG GTCTCCTAAT AATGCGTTTG 
    GTAATAAATG ATCGTGATTC TTAGAAATAT CTTTTTCGCA AAAACATTAG 
    TCTATGGATA AGAAGATAAA TTAACCAAAT CGATGAGTGT AAAAAAACAA 
    AACCAAATCG AGGACATTTG TGAAGAAACT CGTCTTATTC CAATTAGGGG 
    ACGATCACTC GTTTTCTTGC GAGAGGAACT TGGCCTAAAC CGACCATTTT 
    TTTTCTCATG GAATTTGATC ATGTGTTTTT TGTCCTCCTT TAACAGTTCA 
    AAATTTGATG AATAACTACA AGTCAACATT TTTACACATT CAGATCTGCA 
    TCCAAACACC CN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29437808 [Map]; Strand: c
      • AT1G78240.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -1237; Region: intergenic
      • AT1G78250.1 - [+] show detail - pre-tRNA
        Distance: 6165; Region: intergenic
    Flanking Genome Sequence: 54-1617-1 - 3-prime edge 
    TTTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    ATCATCACAT AAAAACAACG TACGAACATA AAAGCCACGT AAAATATATG 
    TTATTGTAAG AATGTAATAT AGAATAAGCC ACAATATATG AAGATTGGAT 
    GATTGATGTA ACACAAAATT AGCCATGTTA TATTGTTATT ATCGACTATA 
    TATACG

AT1G78240.2

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator Summary
Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.
Computational Description
TUMOROUS SHOOT DEVELOPMENT 2 (TSD2); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: shoot development, homogalacturonan biosynthetic process, response to cytokinin stimulus, root development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 1 (TAIR:AT1G13860.3); Has 1228 Blast hits to 1207 proteins in 172 species: Archae - 9; Bacteria - 218; Metazoa - 0; Fungi - 44; Plants - 919; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78250.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Met (anticodon: CAT)
Link
InterPro Scan - TAIR