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54-2280-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3325082 [Map]; Strand: w
      • AT3G10640.1 - [+] show detail - SNF7 family protein
        Distance: -43; Region: promoter
      • AT3G10640.2 - [+] show detail - SNF7 family protein
        Distance: -36; Region: promoter
    Flanking Genome Sequence: 54-2280-1 - 5-prime edge 
    TCTCTAATAA AAGGATTGAG AATTTGTTTA TTTACTTGAT CGAATTGGAT 
    TGGATTTAAT GGAATTGGTC AACTAAAAGA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3324966 [Map]; Strand: w
      • AT3G10640.1 - [+] show detail - SNF7 family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10640.2 - [+] show detail - SNF7 family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2280-1 - 3-prime edge 
    ATTAGAGAAG CCTTCTTCTC CAAAGTCTCG ATTTCTCTTT ATTCTTCCAA 
    ATTCTTTTGT CTCTCTGTAT CATCCAAAAT TCCCAGATTT ATTCACGGAG 
    TTAGAAGAAG AAGATGAGGA GAGTTTTCGG CGCGAAAAAG AACACAGAGC 
    CTCCTCCGTC CATTCAGGAT GCCTCTGATC GGGTTTCTCC TCTCGTTCCT 
    AATTATTACT TTTTTTTTCG ATTTCAATTG GAAGAATT

AT3G10640.1

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 1147 Blast hits to 1145 proteins in 230 species: Archae - 3; Bacteria - 8; Metazoa - 447; Fungi - 307; Plants - 230; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10640.2

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR