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54-2450-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 843772 [Map]; Strand: w
      • AT4G01940.1 - [+] show detail - NFU domain protein 1
        Distance: -313; Region: promoter
    Flanking Genome Sequence: 54-2450-1 - 5-prime edge 
    TTCCAAACAC AATAGTTGCG ACAGTGATGG CCACACCACC CACCACAGAC 
    ATATTTGATT CTGTCCAATT CCATACGGGA CTAACACAAA TGATTTCTGC 
    TGTACAACTT TAATTTTCTT TTAAGACGAA ATATAATAAC ATATCATTCA 
    TTATTACACA TACAAAAAGT GTAATAATTG ACTTAAAAGT CTATATCATT 
    TTGTACTTTT GTAACTGATC ATTAGAAATT TTATAACTCA AGTGTCGATT 
    GACTAACTTT TTTATCGAGT ACGGTATATT AAGAATTGAT TTTTGTTCAC 
    TTCACATGCA AGCTCACATG GTTTCTACTA GAGCCTAGGC CCTAGCGAAC 
    GTAAACGAAT AACTTTACGT TTTGATATAT AGAATATATG TATTTTGACC 
    AACGAATATG CCATAGTTAT ATAAGAGTAA ATAAACTTTT AGTTGACAAA 
    GAAAAACTAA ACTATAGGTC ACATTTATAA CCAACCAGCT ATTAGCCTAT 
    TATATATACA AGGCCATTCA TGTTTGTATT CATGATTTAC AATAAGTTTG 
    GTTACATTAT TTGGGCTAGA CCGTTAAAAA CATTTATGAT GCATGTGCCG 
    ACGAAAACAA TATATAGAAA TTTAATAGAA ACTTTCAAGT TGTCCGAATT 
    AATATAGATG ATTCGTTACA TTATTTGTGG ACCATTGTTT TATATATGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 843656 [Map]; Strand: w
      • AT4G01940.1 - [+] show detail - NFU domain protein 1
        Distance: -197; Region: promoter
    Flanking Genome Sequence: 54-2450-1 - 3-prime edge 
    GTTTGGAAGA AGCAAAGTCT TATAAAACAA ATATGGATTT AATTGATTGA 
    TCCAACATAA AAGAAAAGTC AAACTCACTC ACTTAAAGGA GAACGAAAAA 
    ATTGGTAACC GACACGTGTC TCCGTTCGTT TAAATGGATT GGGTCGTCGT 
    AGTAAAAGCC ATTTATATCG ATCGGCCCAT TTGTTGGGTC CACTGTTTAC 
    ATTTTCTGAT CTGATCCTTT ATTTTAATAT CTTACTAATT TCAGGGACTA 
    CTCCGCAATT TATCGATTCT TCTCCATCGT GCTTCTGATT TTTTTTTGTT 
    AACGGATCAA ATTAACAAAA TCTGAACGAT GATGGCTTCT CTCGCGACTT 
    CCATAGGCGG AAGCT

AT4G01940.1

Model type
Protein coding
Short Description
NFU domain protein 1
Curator Summary
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.
Computational Description
NFU domain protein 1 (NFU1); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 4565 Blast hits to 4561 proteins in 1155 species: Archae - 11; Bacteria - 2225; Metazoa - 159; Fungi - 160; Plants - 186; Viruses - 3; Other Eukaryotes - 1821 (source: NCBI BLink).
Link
InterPro Scan - TAIR