1. Home
  2. Mutant Lines
  3. 54-3537-1

54-3537-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5972834 [Map]; Strand: c
      • AT1G17410.1 - [+] show detail - Nucleoside diphosphate kinase family protein
        Distance: -2859; Region: intergenic
      • AT1G17420.1 - [+] show detail - lipoxygenase 3
        Distance: -4577; Region: intergenic
    Flanking Genome Sequence: 54-3537-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAA ATGCTAAAGA CAAATGTGAG ACTTAATGAG
    TTTTGCCACA TTTTGAAAGA TCCTTTCGGC CTCTTTGCTT CATTATCCCT
    TCCTCTTTCT CAATCATCAT TTGCTTCATA TGCCATGATA ATAATTCTTT
    TGGATTAAGC T
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5987711 [Map]; Strand: c
      • AT1G17440.1 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon1 (5UTR)
      • AT1G17440.2 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-3537-1 - 3-prime edge
    CTTTAANNCG GNNGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    NTAGGTGTAT TATTTTGGTT GAGAGGGGTT TTGTCGATTT TTCTCTCATG
    AAATCGTGTT TTAATTTTTT TCCCAGAAGT TTATTGACCG ATAAAATATG
    GTCTTCTCTT TTTTTTTTGT TACGTTNGTN GAANCAGACC TGGGGAAAAA
    NAATNTGACC CGTCCNCTTN AGNNNNTTTA NCGGAANATG NTCTAAAAAA
    NCCTNGTCCN GACCNGNGTT TNTTTTTTCC ANACTCTCCC CCAACGGGTT
    TAACNCTTTT NGAAGGATTA TCTNNTANAC CAANGCAATC AATATTTTNC
    ATTTTTTTNT TTTNNCCATT TATTNCATCA ANTCCNTCAN CAAAAAGTCA
    ANCTGTTTCN TTNCNNAGGG GATNAANCTA GGGGNCCCTN TTTNCCCNTT
    TTNGGNGTCC CNGGATTTAT GTTTTTAAAT TNATNCACCC CATNGTTTTT
    TTAAAAANTT TTCCCAAANG GGGCCNAAAA AANATTNNCT NTCACCGTNT
    GTCAAAGGGA NAACNGGNTT TCCCGTCTGG GNCTTTCNAT TNNATTTCGG
    ACCAATTCAC CTNTGAAAAC CCTTATNANT NGGNCNNANC CAANCCNNGC
    CNCNNNTTNC AATNCGGTNT ANNTCNACCG GGTGTTNAAC CAAACCCNTC
    TCTCNNTTNG GGTNNNNNGT TACAGNNGNN NCCGGNTCCA NGTTTNNNAA
    ANACNCNNTC NTAGAGTTCT TNGTNCTNAN AANCCCNTNN AANCCCANAN
    AGNNNANTN

AT1G17410.1

Model type
Protein coding
Short Description
Nucleoside diphosphate kinase family protein
Computational Description
Nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1); Has 9030 Blast hits to 8806 proteins in 2558 species: Archae - 289; Bacteria - 4566; Metazoa - 1151; Fungi - 165; Plants - 382; Viruses - 117; Other Eukaryotes - 2360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17420.1

Model type
Protein coding
Short Description
lipoxygenase 3
Curator Summary
Lipoxygenase
Computational Description
lipoxygenase 3 (LOX3); FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, response to fungus, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1470 Blast hits to 1436 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 529; Fungi - 49; Plants - 787; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17440.1

Model type
Protein coding
Short Description
Transcription initiation factor TFIID subunit A
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.
Computational Description
ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17440.2

Model type
Protein coding
Short Description
Transcription initiation factor TFIID subunit A
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.
Computational Description
ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink).
Link
InterPro Scan - TAIR