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54-3928-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12670234 [Map]; Strand: c
      • AT2G29630.3 - [+] show detail - thiaminC
        Distance: 0; Region: exon7 (3UTR)
      • AT2G29630.2 - [+] show detail - thiaminC
        Distance: 0; Region: exon7 (3UTR)
      • AT2G29640.1 - [+] show detail - JOSEPHIN-like protein
        Distance: -972; Region: promoter
    Flanking Genome Sequence: 54-3928-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GTTAAAGACT TCTTTTATGG ATGTAAGCCA
    ATTAAGCTAA ATCTCTTAGC TCATAAGAAA CTAACTGTTG AAAACCGTGG
    AACGAGACTC GAGCGGCAAC AGTAGCTTCT TCTCCTTTAG AAAGCTACAG
    GAAAAAAAAA AANNGGCCNC TNCCTNGCCN GGNNTTNCCC TNNTNAGGGT
    NAAAGGGNNT TTTTTAACCN GGGCCCGGNN NNCCCCCCTT TTNCNAGGGT
    TTNCNGGNTN AANNCCCCCN GGGGNTTTTG NNTNNNAATT CCCCNNCCNA
    ATNCCCCNAA AAAGNTTTGN AACCTNNACN TAAANTGGNT TTNTTGGNGN
    CNTTNGCCNN AANGNACCNA NCNCNTTAAN TGNTTTNAAA GNNACCTGNN
    CTTAAAACNT CTNAGNTTCC NACCCGGGNC NGNNANCNNC GNNNNNNNTT
    TAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12670234 [Map]; Strand: c
      • AT2G29630.3 - [+] show detail - thiaminC
        Distance: 0; Region: exon7 (3UTR)
      • AT2G29630.2 - [+] show detail - thiaminC
        Distance: 0; Region: exon7 (3UTR)
      • AT2G29640.1 - [+] show detail - JOSEPHIN-like protein
        Distance: -972; Region: promoter
    Flanking Genome Sequence: 54-3928-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTACTGATGC ACTAAGTCAC TAACAGTAGG GAATAATTCA ATCAAAAAAT
    CATCCAGATT GATAAAAATG CATTTGCACC TTTGGGGCAT AAGCTGAAAT
    TACTCTGCTC GCACAAATCA GATTTTTAAA ACTTATGATC ATGTTTTCAA
    CNTTATACTC GTTTGTTTAC ATAATGGGAT GATCAGTTGT TCACTTTGAG
    CAAAGCATAC TGGGCAGGTG TAGGGAAAGT GAAGCTCATG AAACTGATCC
    ACTGTAATTC TCATTGTTCA GCTTTTATTT ACACAAATGT GCGAGTCAAC
    ACGTAAAAGA TTATGATATA TTGCAGTAGA ACATAAGTAA AACGACCTTA
    CCAAATGCGA AAGAAAGCT

AT2G29630.2

Model type
Protein coding
Short Description
thiaminC
Curator Summary
Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3' UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the formation of transcripts with alternative 3' UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene. Recessive mutant isolated by Redei. Leaves but not cotyledons white, lethal; restored to normal by thiamine or 2,5-dimethyl-4-aminopyrimidine.
Computational Description
thiaminC (THIC); FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, ADP-ribose pyrophosphohydrolase activity; INVOLVED IN: response to vitamin B1, detection of bacterium, thiamin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817); Has 4416 Blast hits to 4411 proteins in 1719 species: Archae - 238; Bacteria - 3466; Metazoa - 3; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29630.3

Model type
Protein coding
Short Description
thiaminC
Computational Description
thiaminC (THIC); CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817).
Link
InterPro Scan - TAIR

AT2G29640.1

Model type
Protein coding
Short Description
JOSEPHIN-like protein
Computational Description
JOSEPHIN-like protein (JOSL); CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155); BEST Arabidopsis thaliana protein match is: josephin protein-related (TAIR:AT1G07300.1); Has 526 Blast hits to 526 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR