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Mutant Lines
54-5014-1

54-5014-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 6755510 [Map]; Strand: w
- AT5G19990.1 - [+] show detail - regulatory particle triple-A ATPase 6A
  Distance: 430; Region: intergenic
- AT5G20000.1 - [+] show detail - AAA-type ATPase family protein
  Distance: -1123; Region: intergenic

CGGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGTATTT 
TCCCATCCTA CTTTCATCCC ACAACAAGAC ATCTTTTTTT TTTNGGGAGN 
ACAAATTTAN NATTTNTTAN TTNGGGGNAA NNANGGGGGA AANCNNCCGN 
NCCAANNNNA NNCGGGGTTA ANANNNNNTN GGGGGNGGGN ATCAAAAAGG 
TTGGAANTNC CGGNAAAGNN NNGACCCCNN NANANAAAAA NNCTGGGGGG 
GGGGGGGGNG AANGNNCCGG GGGNCCNCCC CAAGNAAAAN CANNCCCTTG 
NGAAANTTNG GGAANAAGGA ANCTNTTNGT AAGGAAANCC NGGNCAAGGG 
AAAACNNCCT NCCCNTTAAG GGNGGGGCAA AAAAAANCTT TTTNANTTNA 
NTGTGNGGAA GCGGGTTTTG AAACCCTTTT TGGGGGGGGG NTNAANCGGN 
NGGGGGGGGG GGAAAAANNG NAAGGGGGCN GGNNANNGNN NCNNNNNACC 
CNANGGGNNN NGNGGNNTNT NAANNCCCNN CGCCANGGNN NGGNGGGGGG 
GGGGGNNCAA AAANAAANNT TNAANNGNGG AAAAAAAANA AAAAAAGGGG 
GGGGGGGGNN NAANNNNCNN NNGNGGGANG GAAGAGGGAC TATTTTAGTA 
ATAAAANCCT TCAACNAAAG ANGAATCGGG GAGAAAAACC TATGAATNAT 
TTATTGAGGG AAAAAACTCT AAACTTAAAA TGGTGTNNAN GCAAAAACCT 
CATCTNTNTN TNTTGGCGGG AAATTGGGCG GGGGGGNGGG AAAATAAAAG 
GNAAANTTTT GAGANANNGA AAAAT

3 prime edge [+] show sequence

Chromosome: 5; Position: 6756786 [Map]; Strand: c
- AT5G20000.1 - [+] show detail - AAA-type ATPase family protein
  Distance: 0; Region: exon1 (5UTR)

CTTTAAANGN ACTGAGGTAT TTTNTNGACC GTTACCGACC GTTTTCATCT 
AGGATAATCC AAGGTTCTTT TCTATATAAA GGTTCTTTGC TCATGATCTT 
AGTCTCTGTG ATCTATCTTT GAATCTCAAA AGCATACTTG AGAGAGATCT 
GTTTCGATAA TTTGCTTCAA TCACCGTGTT AATGGCGGCC GTAGGAGTGG 
AGGCGAGACC TCCTGTGACA GCGATGGAGG AAACCTGCAA CGTTAAGGGA 
GCGGCGGCGA AACAAGGAGA AGGGCTTAAC AAGTACTACC TCCAGCATCT 
CGATGAGCTC CAGCGCCTGC AACGCGAAAA GTCGTATAAC CTTAATCGTC 
TTGAAGCTCA GAGGAATGAA CTCAATTCTC GAGGTCTCTT TTTCCTTCTC 
TAACTCTAAT TTTCATTGAA TTTCTTTGCA AAATTGGATC TTTTGATCAT 
CTTCTTAAGT TTAGTAATCT CGAATT

AT5G19990.1

Model type: Protein coding
Short Description: regulatory particle triple-A ATPase 6A
Curator Summary: 26S proteasome AAA-ATPase subunit
Computational Description: regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G20000.1

Model type: Protein coding
Short Description: AAA-type ATPase family protein
Computational Description: AAA-type ATPase family protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 6A (TAIR:AT5G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR