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54-5054-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16494368 [Map]; Strand: w
      • AT2G39510.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: -1217; Region: intergenic
      • AT2G39518.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 1507; Region: intergenic
    Flanking Genome Sequence: 54-5054-1 - 3-prime edge 
    ATTCTTAACA AGTTAAAGTA ACAAACATCA TCACTACTCA AAATTTTATT 
    ATCCGAATTA ATTTTGTTTA GCAAATCACA CTGAAAGATG ATTGGAATAT 
    ATATCGTCAG GGAGGGTTCG CATAACATGC CTACGATACA AAATTAGGCN 
    TGTCGGGAAT TAAACTCTGT GGCATTCGTC AGATACGTAT AAATTCCCTT 
    ATTATTTTTA TCAAAACATT ACTATTATTA TTCTATGTAA GAGATATAGG 
    TTCCAGGTGG GGAGAATCAT AAAGTGCCAA AAATCTCAAC CACGACGTTG 
    GCCAAAAGTT ATTTTGTTTT CTTTCCTTCC ACATATGATC CGATTCGGAT 
    TTCATAATGC GTTTTTCCAT TTATAAAATG TGTTATGTGG ACATACATTT 
    ACTAATTGTT TTTCCAGCTC CTTTCAAGTA ATATTTAATT TGGTGGGTTC 
    AATTATATAT CTCTTCTTAT CTTTTTTCAT AAACAGCAAA AGCATAATCG 
    ACACGGATC

AT2G39510.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G37460.1); Has 4772 Blast hits to 4753 proteins in 819 species: Archae - 36; Bacteria - 2386; Metazoa - 4; Fungi - 0; Plants - 1228; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39518.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G39530.1); Has 160 Blast hits to 160 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR