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54-5064-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29544445 [Map]; Strand: w
      • AT1G78540.2 - [+] show detail - SH2 domain protein B
        Distance: 0; Region: exon1 (CDS)
      • AT1G78540.1 - [+] show detail - SH2 domain protein B
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5064-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCTG GTGGAATTAA GAAGATAAAC CCAGAAACAA 
    AGGGAGAAAC TTTCGTATTC TTCATCGTCT ACTTCAACAT CAACATTAAA 
    ATCTTCTAAT AAGGAGTATT TCTCCGTCTC AATTGTAGCT GCACTCGCCA 
    TTACTTCACC CCAAAAAAAC TCGACTTTGT ATACGAAACC CTTATAAACC 
    AAGAAAACCC TCTCTTTTTT TGCTGGTTAC AACTACAGAC CTATCGATTA 
    GTTAAAAAGA GAAATGAAAA ATCGTCGAAA GTGTTGATCC CTCGACTTTT 
    TCTCTCCGGC GTCGCGTCTT GTGAACTTCG TCGA

AT1G78540.1

Model type
Protein coding
Short Description
SH2 domain protein B
Curator Summary
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description
SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1); Has 144 Blast hits to 142 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78540.2

Model type
Protein coding
Short Description
SH2 domain protein B
Curator Summary
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description
SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1).
Link
InterPro Scan - TAIR