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ET13977

CSHL Arabidopsis genetrap mutant lines

Original: ET13977

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13977

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 844383 [Map]; Strand: c
      • AT4G01940.1 - [+] show detail - NFU domain protein 1
        Distance: -924; Region: promoter
    Flanking Genome Sequence: ET13977 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAATTCGAGG 
    ACCATTGTTT TATATATGCA CTAGAATTGC ATGAAAGGCA AAATTGTCTG 
    ACAAAGATTT TGGATATGAT ATAGAACATA TATGTGTACA TTACCAAGAA 
    AAAAGATTGT AGTTACATAT ACGTAGACAT TATTAATAAA CAAATGAAAT 
    AATCGATTGG TTACTTACAT ACCCAAAGAA CCGAACTCAC TCACTCATCA 
    AATCCTATAA CAAATTTTAA TTTTTCTTAA CTACTCCATT ATTACCGGCC 
    AAGATCAAAT ACTTGTCTTT TCTAGTGAGA CTTGTGCAGT CGAAATCCAA 
    CGCCTTCCCA ATATCACTCT GAACATTATT GGCCACCTCA AACTTCAACT 
    TTCCATCAGG ATCTTGGCAC GTGGCACCGG AGACAGGGTC GAGAAATTGG 
    ATGGTGTAGG TTGGATACGG ATCCAAGAGG AAGAAAAGCG GGTCAAGTGC 
    CTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 844325 [Map]; Strand: c
      • AT4G01940.1 - [+] show detail - NFU domain protein 1
        Distance: -866; Region: promoter
    Flanking Genome Sequence: ET13977 - 5-prime edge 
    TCCTACTTTC TCCCTGCCAC GAATAATGTA ACGAATCATC TATATTAATT 
    CGGACAAGTT GAAAGTTTTT ATTAAATTTT TATATATTGT TTTGGTTGGC 
    ACATGCATCA TAAATGTTTT TAACGGTCTA GCCTAAATAA TGTAACCAAA 
    CTTATTGTAA ATCATGAATA CAAGCATGAA TGGTCTTGTA TATATAATAG 
    GCTAATAGCT GGTTGGTTAT AAATGTGACC TATAGTTTAG TTTTTCTTTG 
    TCAACTAAAA GTTTATTTAC TCATATATAA CTATGGCATA TTCGTTGGTC 
    AAAATACATA TATTCTATAT ATCAAAACGT AAAGTTATTC GTTTACGTTC 
    GCTAGGGCCT AGGCTCTAGT AGAAACCATG TGAGCTTGCA TGTGAAGTGA 
    ACAAAAATCA ATTCTTAATA TACCGTACTC GATAAAAAAG TTAGTCAATC 
    GACACTTGAG TTATAAAATT TCTAATGATC AGTTACAAAA GTACAAAATG 
    ATATAGACTT TTAAGTCAAT TATTACACTT TTTGTATGTG TAATAATGAA 
    TGATATGTTA TTATATTTC

AT4G01940.1

Model type
Protein coding
Short Description
NFU domain protein 1
Curator Summary
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.
Computational Description
NFU domain protein 1 (NFU1); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 4565 Blast hits to 4561 proteins in 1155 species: Archae - 11; Bacteria - 2225; Metazoa - 159; Fungi - 160; Plants - 186; Viruses - 3; Other Eukaryotes - 1821 (source: NCBI BLink).
Link
InterPro Scan - TAIR