F01108

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01108

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01108

Determination of introduced cDNA(s)

RAFL09-47-C20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-C20 - Resource: pda06314

full reading [+] show sequence

ACTCGTTGGT CCTTAGTCTT CGACCTCCTT TAATCTCTCC ATCTCTTTCT 
CTTAAGATGG CAAAAGACAA AGATATAACG GAGACGCTTC TCACTGCGGC 
GGAAGAACGT TCTGATCTTC CTTTCTTATC CGTCGACGAT ATTCCTCCGA 
TCACCACCGT CGGTGGCTTC GTTAGGGAAT TCAACGTGGA AACCAAAAAG 
CTATGGTACT TGGCCGGTCC CGCCATTTTC ACATCCGTGA ACCAATATTC 
TCTCGGCGCT ATTACTCAGG TCTTCGCCGG TCACATCAGC ACCATCGCTC 
TTGCCGCTGT CTCCGTCGAA AACTCCGTCG TTGCCGGCTT CTCATTCGGC 
ATCATGCTTG GAATGGGAAG TGCGTTAGAA ACGCTATGTG GACAAGCGTT 
TGGAGCAGGA AAATTGTCAA TGCTTGGCGT TTACTTGCAA CGATCATGGG 
TGATACTAAA CGTGACTGCT CTTATCCTCT CTCTCCTTTA CATTTTCGCC 
GCCCCTATCC TCGCGTCCAT TGGTCAAACG GCGGCAATCT CTAGCGCGGC 
CGGAATATTT TCCATCTACA TGATCCCTCA AATCTTTGCC TACGCCATCA 
ATTTTCCAAC CGCTAAATTT TTGCAATCGC AAAGCAAGAT AATGGTCATG 
GCCGTGATAT CGGCTGTTGC ACTTGTTATA CACGTGCCTC TCACGTGGTT 
TGTCATTGTG AAGCTCCAGT GGGGTATGCC AGGTCTAGCC GTAGTGCTTA 
ACGCGTCGTG GTGCTTCATT GACATGGCTC AGCTTGTGTA CATATTTAGT 
GGTACGTGTG GTGAGGCTTG GTCTGGTTTC TCGTGGGAGG CTTTTCATAA 
TTTGTGGAGT TTCGTTAGAT TATCTTTGGC TTCTGCTGTT ATGCTCTGTT 
TGGAGGTTTG GTATTTTATG GCAATCATAT TATTTGCTGG ATATTTGAAG 
AATGCTGAAA TCTCTGTAGC TGCCCTCTCC ATCTGCATGA ATATTTTGGG 
ATGGACTGCT ATGATTGCTA TTGGGATGAA CACAGCCGTA AGTGTGAGAG 
TGTCTAATGA ATTAGGAGCT AACCATCCAA GAACCGCGAA ATTCTCACTA 
CTTGTGGCAG TGATAACATC GACGCTAATC GGATTCATTG TATCAATGAT 
TCTACTCATC TTTAGAGATC AATATCCATC ACTTTTTGTG AAAGACGAAA 
AAGTCATCAT TCTTGTTAAA GAACTCACAC CAATACTTGC ACTTTCCATT 
GTCATCAACA ATGTCCAACC TGTCTTATCA GGTGTGGCTG TGGGAGCTGG 
ATGGCAAGCA GTGGTGGCCT ACGTTAACAT CGCCTGCTAT TACGTGTTTG 
GAATCCCATT TGGTCTATTA TTGGGGTACA AGCTTAACTA TGGTGTAATG 
GGAATCTGGT GTGGAATGTT GACGGGGACC GTGGTTCAGA CAATAGTTTT 
AACATGGATG ATCTGCAAAA CAAATTGGGA CACAGAGGCT TCAATGGCTG 
AGGATAGGAT AAGAGAATGG GGAGGAGAAG TATCAGAAAT AAAGCAACTC 
ATAAACTAAA AGACATCATA GTATTCAAAG AAACGATCTG CCCCACCCTT 
TGTATTTGGT CACAATAGGT CTTCGTTTTG GTTATTATAA GTCTTTGATA 
GAGTTTCTCT AAT

Gene models with high sequence identity

AT3G26590.1 [+] show detail - MATE efflux family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	MULTIDRUG RESISTANCE PUMP	1.5e-281
HMMPanther	Multi antimicrobial extrusion protein MatE	1.5e-281
HMMTigr	Multi antimicrobial extrusion protein MatE	6.8e-84
HMMPfam	Multi antimicrobial extrusion protein MatE	4.2e-29
HMMPfam	Multi antimicrobial extrusion protein MatE	1.7e-44

See the detailed result >

AT3G26590.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G38030.1); Has 11119 Blast hits to 11024 proteins in 1994 species: Archae - 242; Bacteria - 8025; Metazoa - 141; Fungi - 326; Plants - 1364; Viruses - 0; Other Eukaryotes - 1021 (source: NCBI BLink).
Link: InterPro Scan - TAIR