F01437

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01437

Determination of introduced cDNA(s)

  • RAFL05-14-H02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-H02 - Resource: pda03020

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-H02 - full reading 
    AAAATAAAAA CCTTTACTTA TCTTCTTTCT TCTCACTTCT CAGACCTCAA 
    TTTCCAAGCA GAGATGACGG TGAAGATAAG GCTCGCGCGT CTTGGTTGTA 
    AACACCGACC CTTCTATCGT GTAGTTGTCG CCGATGAAAA ATCGCGCAGG 
    GACGGTAAAC AAATCGAGGT GTTAGGCTTT TATGATCCAC TCCAAGGCAA 
    AGAAGATGCG GATAGAGTGA GCCTCAAATT CGACAGAATC AAGTACTGGT 
    TATCTGTTGG AGCTCAACCA ACAGACACAG TGGAAAGCAT GCTTTTCAGG 
    GCCGGTTTGA TACCACCAAA GCCTATGGTA GTGGTCGGTT CGAAAAATGG 
    GCAGAAGTCT ACGAGCCAAC ATGTTTCACC CATTACAGGT GAAATCTTGA 
    ACTAAGAGTG TTGATGCGTT GAGCAAGAAA GAGCCTTTTG TGTCTGTGTG 
    AAAGGAGTTT ATGTAATGTT GTTTAAGACT TTTCTGTTTA TGTGAAAGGA 
    GTTAATGTAA TGTTGTTTAA GACTTTTGCT TTCTATGTGA AAGCAGTTTA 
    ATGTTATGTT GGTTAAG

    Gene models with high sequence identity

    1. AT4G34620.1 [+] show detail - small subunit ribosomal protein 16
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MITOCHONDRIAL RIBOSOMAL PROTEIN S16 9.7e-50
    HMMPanther Ribosomal protein S16 9.7e-50
    HAMAP Ribosomal protein S16 24.217
    HMMTigr Ribosomal protein S16 1e-47
    HMMPfam Ribosomal protein S16 2.8e-27
    superfamily Ribosomal protein S16 2.7e-29
    Gene3D Ribosomal protein S16 2.1e-27

    See the detailed result >

    AT4G34620.1

    Model type
    Protein coding
    Short Description
    small subunit ribosomal protein 16
    Curator Summary
    Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype
    Computational Description
    small subunit ribosomal protein 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: Ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 8683 Blast hits to 8683 proteins in 3031 species: Archae - 0; Bacteria - 5404; Metazoa - 128; Fungi - 129; Plants - 717; Viruses - 0; Other Eukaryotes - 2305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR