F01626

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01626

Determination of introduced cDNA(s)

RAFL09-43-J02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-J02 - Resource: pda17727

full reading [+] show sequence

GCAAGCATCG TCAGGCTCTT CCCTCTTCTT TCTCGTGCTA CTTCCGAGAG 
AATTCGATCA TACAAAACTT CAAATTTTAG GATTAGGGTT CCATCGTTCT 
CCGTGATTTT GAGGACATGT CAGGGAAACG GGTCATAGCA ATATGTATGT 
CTGGTGGGGA GTTCCAGACA GAGAAAGGCG GGTCGCTGTC TTACAAAGGC 
GGCGATGCTC ACGCGATAGA TGTGGACGAG CAGATGAAAT TCATAGACTT 
TATCTCAGAA ATTGGTGAGA TGTTTAATTG CGATGTCAGG ACAGTTTCTC 
TAAAATACTT TCTCCCGGAT AACAAGAAAA CGCTCATCTC CATATCTAAC 
GATAAAGATT TGAAACGGAT GATCAAATTT CATGAGAACT CCAACACTGC 
TGATGTCTAT CTCTTACCCG AAGAAGCTAC TCCCGACATT TCAAACATGC 
CAGCTAGCAG ATCAAGCAGA ACAACGTTGT CTGAAGCGAT TCCCCCGGTT 
CCTATGGACG ACATGATTGA CGACACAATG GGACCAGAAG AGCTTCCCAT 
CTCAATCTCA GTCTCAGCTC CTCCCGCTGT GACTATGGAG GAAGTCATGA 
ACCGAGCTGA AGATGCACAG ATTATTATTA ATCCATCCGA ATTGATGTCA 
TCGATTGTTG AAGTCCCGAA TCCGAAAGGA GATATTCTCA CAAAGGCAAG 
AACACAGCAG TGGCAGAACA CAATCACAGG AGTGGGTCAA CGGTTTAAAA 
ATGTTGGGGA GTTTTCGTGA AGCGCTACGG AAATACGCCA TAGCAAATCA 
GTTTGGATTC CGCTACAAAA AGAACGATAG CCACCGAGTG ACAGTTAAAT 
GTAAAGCCGA AGGTTGCCCT TGGAGGATCC ATGCTTCAAG GCTATCAACA 
ACTCAGCTGA TCTGTATTAA GAAAATGAAT CCGACACATA CTTGTGAAGG 
TGCGGGTGGA ATTAATGGGC TTCAGACGAG TAGAAGCTGG GTTGCTAGCA 
TTATTAAGGA GAAGCTGAAA GTCTTTCCTA ACTATAAACC GAAAGACATT 
GTCAGCGACA TCAAGGAAGA GTATGGGATT CAGCTGAATT ACTTTCAGGC 
ATGGCGTGGT AAAGAAATTG CAAGAGAGCA GCTTCAAGGA TCTTACAAGG 
ACGGTTACAA ACAGCTTCCG CTGTTCTGCG AGAAGATAAT GGAAACTAAT 
CCGGGCAGTC TCGCTACATT CACAACGAAG GAAGATTCAA GTTTTCACCG 
TGTTTTTGTT TCGTTTCACG CCTCGGTTCA TGGTTTTCTC GAGGCTTGTC 
GACCACTTGT GTTTCTCGAC AGTATGCAGT TGAAATCAAA GTATCAGGGG 
ACCTTATTAG CTGCGACTTC TGTGGATGGG GACGACGAAG TGTTTCCTCT 
GGCTTTTGCA GTGGTCGATG CGGAGACGGA TGATAACTGG GAATGGTTCT 
TGCTTCAGCT GAGATCTCTG CTGTCCACGC CTTGCTATAT AACTTTCGTT 
GCTGATCGAC AGAAGAATCT GCAGGAATCG ATCCCAAAAG TGTTTGAGAA 
GTCGTTTCAC GCGTATTGTT TGCGGTATTT GACTGACGAG CTCATCAAAG 
ACTTGAAAGG ACCATTCTCT CATGAGATCA AGCGGTTAAT CGTTGACGAC 
TTTTACTCTG CAGCTTACGC TCCCAGAGCA GATTCATTCG AGAGGCATGT 
TGAGAACATC AAAGGCCTCT CACCTGAAGC TTATGATTGG ATTGTGCAAA 
AAAGCCAGCC TGATCATTGG GCCAACGCTT ACTTCCGTGG TGCTAGGTAC 
AACCACATGA CTTCACACTC AGGCGAACCG TTCTTTAGCT GGGCTTCCGA 
CGCCAACGAT CTACCAATAA CTCAAATGGT TGATGTGATC CGTGGAAAAA 
TAATGGGATT GATCCATGTG AGACGGATTA GTGCCAACGA AGCCAATGGA 
AATTTGACTC CCTCCATGGA AGTAAAGCTA GAGAAGGAGA GTCTAAGAGC 
GCAAACGGTT CACGTAGCAC CATCAGCAGA TAACAACTTG TTCCAAGTCC 
GTGGAGAGAC GTATGAGCTC GTGAACATGG CTGAGTGTGA CTGTAGCTGC 
AAAGGGTGGC AGTTAACAGG TTTGCCGTGT CACCACGCAG TAGCGGTTAT 
AAACTATTAC GGACGTAATC CGTATGATTA CTGTTCGAAA TATTTTACTG 
TTGCGTACTA CAGGTCAACG TATGCGCAGT CGATAAATCC GGTTCCACTT 
TCTTTTTTTT TGTTTATTAA CTTATTTTTC TTTTCAACTT TCTGTCAACA 
TTTTTAAAGT GATCAATCTG TAAGAAAGAT TTTTTTTTTA CGTTAAACAT 
TTCCCTTATG GGATTTTTAG TTCAAAAAAA AAA

Gene models with high sequence identity

AT3G05850.1 [+] show detail - transposable element gene
E-value: 0; Score: 99.96

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Transposase, MuDR, plant	8e-20
HMMPfam	MULE transposase, conserved domain	1.2e-17
HMMPfam	Zinc finger, SWIM-type	2.5e-09
HMMPfam	Octicosapeptide/Phox/Bem1p	1.5e-15
ProfileScan	Zinc finger, SWIM-type	10.324
HMMSmart	Zinc finger, PMZ-type	5.2e-11
HMMSmart	Octicosapeptide/Phox/Bem1p	3.8e-19

See the detailed result >