F01946

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01946

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01946

Determination of introduced cDNA(s)

  • RAFL06-74-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-D24 - Resource: pda03481

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-D24 - full reading 
    AAAAGATGGA AAAAGTTTTC TCCGACGAAG AAATCTCCGG TAACCATCAC 
    TGGTCGGTTA ATGGAATGAC GTCGTTGAAT CGCAGTGCTT CCGAATGGGC 
    ATTCAATCGT TTCATACAAG AATCCTCCGC CGCTGCAGAC GACGGAGAAT 
    CTACGACGGC GTGTGGTGTT TCCGTCTCCT CTCCTCCTAA TGTTCCTGTA 
    GATTCAGAGG AATACAGAGC ATTTCTCAAG AGTAAACTTA ATCTTGCTTG 
    TGCTGCTGTC GCCATGAAAA GGGATACTTC TGGTAGATCT GACAATGGTG 
    GAGCCAATGA ATCAGAACAA GCCTCTCTTG CTTCTTCCAA AGCTACACCA 
    ATGATGAGCA GTGCTATAAC AAGTGGATCT GAGCTCTCTG GTGATGAAGA 
    AGAAGCTGAT GGTGAAACTA ATATGAACCC TACTAATGTT AAACGCGTTA 
    AAAGGATGCT CTCTAATAGA GAATCAGCTA GACGGTCCAG AAGAAGAAAG 
    CAAGCACACT TGAGTGAGCT AGAGACACAA GTTTCACAGC TTCGTGTAGA 
    GAATTCAAAA CTCATGAAGG GTCTCACTGA TGTAACTCAA ACATTCAATG 
    ATGCATCTGT AGAAAACAGA GTTTTAAAAG CCAATATTGA GACACTACGA 
    GCAAAGGTGA AAATGGCTGA AGAGACAGTG AAGAGACTCA CTGGCTTTAA 
    CCCAATGTTC CACAATATGC CTCAGATTGT TTCAACTGTC TCTCTTCCTT 
    CAGAGACATC AAATTCTCCA GACACTACAA GCAGCCAAGT GACTACACCA 
    GAGATCATTA GCTCGGGGAA CAAAGGCAAG GCCTTGATAG GGTGCAAGAT 
    GAACAGAACA GCTTCGATGC GTAGAGTTGA GAGCTTGGAA CATCTGCAGA 
    AACGTATTCG AAGCGTTGGG GATCAGTAGC TGTTAAAGAA GAATCTTGAT 
    TTGTAACATT AATCTTAAGA CATATGTTAA GACAAAATGT TGTATGTTTT 
    TGTAAAGAAT TGTTTTTTCA GATTATTTAA ATTTTTTTTT GTCTTCTTCG 
    TTGATTGTTT GTGTTGAACT TCTAATTTTC ATTGTACATG TCTTTTGTTA 
    AATTTACAAA GTTTTTCG

    Gene models with high sequence identity

    1. AT5G28770.1 [+] show detail - bZIP transcription factor family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.921
    HMMPfam Basic leucine-zipper, C-terminal 6e-21
    HMMPfam bZIP transcription factor, bZIP-1 5.5e-13
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    Gene3D no description 1.6e-05
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 1.5e-17
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther TGACG-MOTIF-BINDING FACTOR 3.9e-06
    HMMPanther X-BOX TRANSCRIPTION FACTOR-RELATED 3.9e-06

    See the detailed result >

    AT5G28770.1

    Model type
    Protein coding
    Short Description
    bZIP transcription factor family protein
    Curator Summary
    bZIP protein BZO2H3 mRNA, partial cds
    Computational Description
    BZO2H3; FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: basic leucine zipper 25 (TAIR:AT3G54620.1); Has 2647 Blast hits to 2627 proteins in 198 species: Archae - 0; Bacteria - 8; Metazoa - 224; Fungi - 122; Plants - 2188; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR