F02704

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02704

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02704

Determination of introduced cDNA(s)

RAFL05-08-C09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-C09 - Resource: pda01180

full reading [+] show sequence

ACTGTTTTAG CTACGGTCAG CTTTTCTCTA GCGTCGGGGC CTCGATCTCT 
TGATTTGAGC TTTTCTTAGG TCTGTCTCTC TCTGTACACT CTCTCCGCCG 
TCGTATCTCG CCGTCGATTT CAATTTTTCC GACGATATGA AGCTCACCGT 
TAAAACTCTC AAGGGCAGTC ATTTTGAAAT TAGGGTTTTA CCCTCCGATA 
CGATAATGGC GGTGAAGAAG AATATAGAAG ATTCACAAGG AAAAGACAAT 
TATCCATGTG GGCAGCAATT GTTGATTCAC AATGGAAAAG TTTTGAAAGA 
TGAAACTAGC CTGGTGGAGA ACAAAGTTAC GGAGGAAGGA TTTCTCGTCG 
TTATGCTTAG CAAGAGCAAA TCTGGAGGTT CAGCTGGTCA GGCTTCGGTT 
CAGCCTGTTT CCGCTACCAC ATCTTCGACT AAGCCTGCAG CTCCATCTAC 
AACCCAGTCT TCACCTGTTC CTGCTTCACC TATTCCTGCT CAAGAACAAC 
CGGCGGCACA GACTGACACC TATGGACAAG CTGCGTCAAC ATTAGTTAGT 
GGTAGTAGTC TTGAGCAAAT GGTCCAACAG ATAATGGAAA TGGGAGGTGG 
AAGTTGGGAC AAAGAAACAG TTACTCGTGC ACTTCGTGCA GCTTATAACA 
ACCCTGAGAG AGCAGTGGAT TATTTGTACT CTGGAATTCC TCAAACTGCT 
GAAGTAGCTG TACCAGTACC TGAGGCTCAG ATTGCAGGAT CCGGTGCAGC 
CCCTGTTGCA CCTGCATCTG GAGGACCTAA CTCATCTCCT TTGGATTTAT 
TTCCTCAGGA AACAGTTGCT GCTGCTGGCT CTGGAGATCT TGGGACACTT 
GAATTTCTTA GAAACAATGA CCAGTTCCAA CAATTACGCA CCATGGTCCA 
TTCCAACCCT CAAATTCTTC AGCCCATGCT TCAGGAACTT GGAAAGCAAA 
ACCCTCAACT TCTGAGGCTA ATTCAAGAAA ACCAGGCAGA GTTTCTTCAG 
TTAGTAAATG AGCCCTATGA GGGTTCTGAC GGGGAGGGGG ACATGTTCGA 
TCAACCCGAG CAAGAAATGC CACATGCCAT TAACGTTACC CCAGCAGAAC 
AAGAAGCGAT TCAACGGCTC GAGGCAATGG GATTTGATAG AGCCTTAGTA 
ATAGAAGCGT TCCTCGCATG TGACCGAAAT GAAGAATTGG CAGCTAACTA 
TCTATTGGAG AACTCAGGTG ACTTTGAAGA CTGAGTTCAC AAAACGTTAT 
CTCTTCTTCG AAAAAGTTTT GGCTCTTTTC TTACGTTGAA TTACATATCT 
TCCGTGAATT AATGTGTGGG ATTTGATCTC TCTCTCTCTG TGACTTAGTT 
TGTCCTTTTT TTGTTTTGAA TATTATTTTC TCCGTTTGCG ATGGGGGCGG 
TTGTTACGTT TGTGATAGAT ATTGAAGCAG AGAGATACAA AAGTGTGATC 
ACATAATTCT CGAGGGATAA ACATAAAGTG TAATCGATAG ATATTTATCC 
TTAAAAAAAA AAAAAAAA

Gene models with high sequence identity

AT1G79650.2 [+] show detail - Rad23 UV excision repair protein family
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	2.1e-14
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	2.6e-09
HMMPfam	XPC-binding domain	2.5e-23
HMMPfam	Ubiquitin	4.7e-14
HMMTigr	UV excision repair protein Rad23	2.2e-169
FPrintScan	UV excision repair protein Rad23, C-terminal	1.3e-33
FPrintScan	UV excision repair protein Rad23, C-terminal	1.3e-33
FPrintScan	UV excision repair protein Rad23, C-terminal	1.3e-33
FPrintScan	UV excision repair protein Rad23, C-terminal	1.3e-33
HMMSmart	Ubiquitin	1.4e-19
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	4.4e-05
HMMSmart	Heat shock chaperonin-binding	9.9e-08
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	2.2e-08
HMMPanther	UV EXCISION REPAIR PROTEIN RAD23	6.6e-159
Gene3D	no description	1.1e-20
Gene3D	no description	1.8e-15
Gene3D	XPC-binding domain	6.6e-23
Gene3D	no description	1.4e-16
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	12.667
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	15.39
ProfileScan	Ubiquitin supergroup	17.561
superfamily	XPC-binding domain	6.3e-23
superfamily	Ubiquitin-like	1.7e-21
superfamily	UBA-like	9e-13
superfamily	UBA-like	2.2e-10

See the detailed result >

AT1G79650.2

Model type: Protein coding
Short Description: Rad23 UV excision repair protein family
Curator Summary: Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
Computational Description: RAD23; FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G16190.1); Has 8953 Blast hits to 4550 proteins in 626 species: Archae - 0; Bacteria - 45; Metazoa - 4005; Fungi - 1183; Plants - 2293; Viruses - 114; Other Eukaryotes - 1313 (source: NCBI BLink).
Link: InterPro Scan - TAIR